TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000055_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Anopheles gambiae # Complete
         (396 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01000811.1| Hyaloperonospora parasitica strain Emoy2 v-7....   162   3e-88
gb|ABWE01000812.1| Hyaloperonospora parasitica strain Emoy2 v-7....    31   3.8  
gb|ABWE01000069.1| Hyaloperonospora parasitica strain Emoy2 v-7....    30   6.4  

>gb|ABWE01000811.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont82.8, whole genome
             shotgun sequence
          Length = 27083

 Score =  162 bits (410), Expect(3) = 3e-88
 Identities = 85/175 (48%), Positives = 117/175 (66%), Gaps = 1/175 (0%)
 Frame = +2

Query: 26    FDPTAHDLDASFRLTRFADLKGRCCKVPKEVLEKLVSSLQQDYMQDPDQPFMPMSSPRIG 85
             FDP +  L+  F LT F+ LKG  CK+P+  L   + ++  + ++  + P          
Sbjct: 12371 FDPLSLGLEEDFVLTNFSALKGCGCKLPQAKLLGYLDNVMPNDVKPNETP---------- 12520

Query: 86    IGLDCSVIPLRHG-GLCMVQTTDFFYPIVDDPYMMGKIACANVLSDLYAMGVTEVDNMLM 144
              G+D SV+ + HG GL +V TTDFF+P V+DPY+ G+IACANVLSD+YAMGVTEVD MLM
Sbjct: 12521 -GMDSSVVKISHGSGLYLVSTTDFFFPSVEDPYVQGQIACANVLSDVYAMGVTEVDTMLM 12697

Query: 145   LLAVSTKMIEKERDVVIPLIMRGFKDSALEAGTSVTGGHSVVNPWCTIGGVATTI 199
             +L V   M EK+RDVV   ++RGF D A +A T+VTGG +V+NPW  +GGVA ++
Sbjct: 12698 ILGVCRDMTEKQRDVVTTEMIRGFNDLARQAQTNVTGGQTVMNPWPIVGGVAMSV 12862



 Score =  120 bits (300), Expect(3) = 3e-88
 Identities = 58/119 (48%), Positives = 78/119 (65%)
 Frame = +1

Query: 278   YNAHGATDVTGFGLLGHAQTLASHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHS 337
             + AH ATDVTGFGLL HA+  A  Q  +VSF +H LP+I  M  V +  GN F+LL G +
Sbjct: 13285 HGAHSATDVTGFGLLAHARNQAKSQLEDVSFELHTLPIIKNMVKVNEVIGNSFKLLDGFA 13464

Query: 338   AETSGGLLICLPREQAAAYCKDIEKQEGCQAWIIGIVEKGSRTARIIDKPRVIEVPAKD 396
             AETSGGLL+CLP E A A+ K++ + +   AWI+G V  G + A I+  P ++EV  +D
Sbjct: 13465 AETSGGLLLCLPAENAEAFIKELRELDEKPAWIVGRVIAGLKDACIVPNPTIVEVSPED 13641



 Score = 84.3 bits (207), Expect(3) = 3e-88
 Identities = 40/74 (54%), Positives = 52/74 (70%)
 Frame = +3

Query: 204   EFIVPDNAVVGDVLVLTKALGTQVAVNAHQWLDQSERWNRIKLVVSEEDVRKAYHRAMDS 263
             + I P+NAVVGDV++LTK LGTQVAVN  QW  + E+W R+  VV+  D   A+  A +S
Sbjct: 12972 QIIRPENAVVGDVIILTKPLGTQVAVNVFQWKKKPEQWQRVNQVVTPHDADVAFQMASES 13151

Query: 264   MSRLNRVAARLMHK 277
             M RLN  AA++MHK
Sbjct: 13152 MGRLNLNAAKMMHK 13193


>gb|ABWE01000812.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont127.4, whole
           genome shotgun sequence
          Length = 27046

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 316 IAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQAAAYCKDIEKQEGCQAW 369
           +  + AVA++CG   Q     +  TSG   +C  R  A  +C  I   + C+ W
Sbjct: 621 LTSVCAVARSCGQRRQTRNDRAWRTSGCCTLCAKRCAALCWCSLI--ADDCRLW 776


>gb|ABWE01000069.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont24.3, whole genome
             shotgun sequence
          Length = 92171

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = -2

Query: 121   KIACANVLSDLYAMGVTEVDNMLMLLAVSTKMIEKERDVVIPLIMRGFKDSALEAGTSV 179
             K+ CA V+  L  +    V N+L LL      +E E  VVIP    G    + E  T+V
Sbjct: 63670 KLLCATVVEQLSDLDHWGVLNVLCLLLTRIVPVEDEMKVVIPQYKSGLYHVSKEVRTAV 63494


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.322    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,596,474
Number of Sequences: 5422
Number of extensions: 446366
Number of successful extensions: 1775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 1454
Number of HSP's gapped (non-prelim): 528
length of query: 396
length of database: 22,486,378
effective HSP length: 107
effective length of query: 289
effective length of database: 21,906,224
effective search space: 6330898736
effective search space used: 6330898736
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)