TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) Trypanosoma cruzi strain CL Brener tcruzi_1047053508727, whole genome shotgun sequence:[translate(1)] (89 letters) Database: E.siliculosus/genome.fa 35 sequences; 195,934,119 total letters Searching...................................done Score E Sequences producing significant alignments: (bits) Value emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genom... 39 0.004 emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genom... 32 0.57 emb|FN649748.1| Ectocarpus siliculosus strain Ec 32, whole genom... 31 0.97 emb|FN649730.1| Ectocarpus siliculosus strain Ec 32, whole genom... 30 1.7 emb|FN649734.1| Ectocarpus siliculosus strain Ec 32, whole genom... 30 1.7 emb|FN649758.1| Ectocarpus siliculosus strain Ec 32, whole genom... 30 2.2 emb|FN649733.1| Ectocarpus siliculosus strain Ec 32, whole genom... 29 2.8 emb|FN649741.1| Ectocarpus siliculosus strain Ec 32, whole genom... 29 2.8 emb|FN649752.1| Ectocarpus siliculosus strain Ec 32, whole genom... 29 2.8 emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genom... 29 3.7 emb|FN649738.1| Ectocarpus siliculosus strain Ec 32, whole genom... 29 3.7 emb|FN649756.1| Ectocarpus siliculosus strain Ec 32, whole genom... 29 3.7 emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genom... 28 4.8 emb|FN649735.1| Ectocarpus siliculosus strain Ec 32, whole genom... 28 4.8 emb|FN649744.1| Ectocarpus siliculosus strain Ec 32, whole genom... 28 4.8 emb|FN649750.1| Ectocarpus siliculosus strain Ec 32, whole genom... 28 4.8 emb|FN649726.1| Ectocarpus siliculosus strain Ec 32, whole genom... 28 8.2 emb|FN649729.1| Ectocarpus siliculosus strain Ec 32, whole genom... 28 8.2 emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genom... 28 8.2 >emb|FN649760.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, unassigned sequences LGUn Length = 58155991 Score = 38.9 bits (89), Expect = 0.004 Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Frame = +2 Query: 15 FSLVDFFLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIHG 74 FS VD S++ L L S + VS + T VP GGR + H P GP+ G Sbjct: 10181987 FSFVDKNSSVITL------ALSSPDVVSTSMSSSARKTSRVPVCGGRGLEHGPCGPSAPG 10182148 Query: 75 LPKGSLTG---GCAT 86 + +GSL G CAT Sbjct: 10182149 IVRGSLWGVRVTCAT 10182193 Score = 29.3 bits (64), Expect = 2.8 Identities = 17/35 (48%), Positives = 21/35 (60%) Frame = +2 Query: 2 PYVANGRVVDSKPFSLVDFFLSILRLMWLFFATLV 36 P + GR+ S+PF F LS LR +LFF TLV Sbjct: 5918960 PSL*KGRIT*SRPFLCCVFVLSCLRFFYLFF-TLV 5919061 Score = 29.3 bits (64), Expect = 2.8 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -3 Query: 58 GGGRSVGHAPRGPNIHGLPKGSLTGG 83 GGG S H P + H LP+G L GG Sbjct: 27354458 GGGASPQHRPGHQDRHELPRGELLGG 27354381 Score = 28.9 bits (63), Expect = 3.7 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +2 Query: 67 PRGPNIHGLPKGSLTGGCA 85 PRGP + LP+G L G CA Sbjct: 1823375 PRGPCLRALPQGELHGACA 1823431 Score = 28.9 bits (63), Expect = 3.7 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -2 Query: 58 GGGRSVGHAPRGPNIHGLPKGSLTGGC 84 GG RSV H R + GLP +LT GC Sbjct: 55021590 GGSRSVRHVERRNRVQGLP--TLTNGC 55021516 Score = 28.5 bits (62), Expect = 4.8 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Frame = +3 Query: 17 LVDFFLS----ILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGH--APRGP 70 L DFF + RL+ + T + + ++H + S TR++P RSVGH A Sbjct: 8446197 LTDFFTT*D*KCARLLRVKLTTTFTLQ--AKHRTRFLSQTRVLPVKSARSVGHMTAKMAA 8446370 Query: 71 NIHGLP 76 ++H P Sbjct: 8446371 DLHSCP 8446388 Score = 27.7 bits (60), Expect = 8.2 Identities = 13/30 (43%), Positives = 14/30 (46%) Frame = -3 Query: 58 GGGRSVGHAPRGPNIHGLPKGSLTGGCATG 87 GG G RGP+ H P G TGG G Sbjct: 6613202 GGRNGGGKGERGPSGHRTPTGGGTGGFGVG 6613113 >emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG26 Length = 7107661 Score = 31.6 bits (70), Expect = 0.57 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 5/51 (9%) Frame = +1 Query: 42 SQHVQEYRSTTRIVPFGGGRSVGHAPRGP-----NIHGLPKGSLTGGCATG 87 S V+++RST R FGG R+ G P P G+P S G TG Sbjct: 2735776 SGRVRQFRSTQRTSSFGGARASGAPPPRPPRGALRACGIPSPSTVGTSRTG 2735928 Score = 27.7 bits (60), Expect = 8.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +3 Query: 44 HVQEYRSTTRIVPFGGGRSVGHAPRG 69 H + + + T PFGGGRS+G RG Sbjct: 6154164 HSRRFVACTPGTPFGGGRSLGAGRRG 6154241 >emb|FN649748.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG23 Length = 3983565 Score = 30.8 bits (68), Expect = 0.97 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +1 Query: 34 TLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPN 71 T V S P S +Q+Y++ ++ G + VGH P GPN Sbjct: 3024358 TGVPSRPRS--IQQYKTKYKVHSTGKNKKVGHRPHGPN 3024465 >emb|FN649730.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG05 Length = 2246853 Score = 30.0 bits (66), Expect = 1.7 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%) Frame = +3 Query: 30 LFFATLVSSEPV------SQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIH 73 L F + EPV S + +YR+T+R P G V H P P H Sbjct: 611019 LLFPFVYK*EPVPMTVYPSYSLAKYRTTSRACPMRGRAQVAHKPTSPTAH 611168 >emb|FN649734.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG09 Length = 6071967 Score = 30.0 bits (66), Expect = 1.7 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = +2 Query: 32 FATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAP 67 +AT+V + P+ R+ TR+ P G R+ HAP Sbjct: 387617 YATMVRASPLQYRQPVKRTHTRVKPTNGARTHSHAP 387724 Score = 29.6 bits (65), Expect = 2.2 Identities = 21/67 (31%), Positives = 30/67 (44%) Frame = +3 Query: 21 FLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIHGLPKGSL 80 F +L + FF S VS H R ++ GGRS+G RG N+ + G+ Sbjct: 2970483 FCLLLSFFFFFFFIKYPSSRVSHHAGFKRCSSL-----GGRSLGIVARGGNLTKVFLGAA 2970647 Query: 81 TGGCATG 87 +GG G Sbjct: 2970648 SGGGGGG 2970668 >emb|FN649758.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG33 Length = 4484617 Score = 29.6 bits (65), Expect = 2.2 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = -1 Query: 50 STTRIVPF---GGGRSVGH-APRGPNIHGLPKGSLTGGCAT 86 ST R +PF G GR G PR I G +GSL+GG T Sbjct: 3968428 STRRGLPFLRSGAGRDAGEPVPRAQRISGRGEGSLSGGNRT 3968306 Score = 28.1 bits (61), Expect = 6.3 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +2 Query: 35 LVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRG 69 + +S+ + +H+++ R VP GGR G PRG Sbjct: 567509 VTTSQNIRRHLRKRRGPVGTVPGAGGRGGGLRPRG 567613 >emb|FN649733.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG08 Length = 4529048 Score = 29.3 bits (64), Expect = 2.8 Identities = 19/49 (38%), Positives = 25/49 (51%) Frame = +3 Query: 35 LVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIHGLPKGSLTGG 83 L+S P V + +TTR F GGR++GH+ PN G G T G Sbjct: 3593142 LISGRP--SVVPSFSTTTRSAGF*GGRNMGHS--SPNRFGRADGRATLG 3593276 >emb|FN649741.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG16 Length = 8064047 Score = 29.3 bits (64), Expect = 2.8 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +2 Query: 58 GGGRSVGHAPRGPNIHGLPKGS 79 GGG+ G AP GP G P+G+ Sbjct: 4004834 GGGQGAGGAPEGPRHQGRPRGA 4004899 Score = 28.9 bits (63), Expect = 3.7 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = +2 Query: 49 RSTTRIVPFGGGRSVGHAPRGP 70 R R+V GGG S HAPR P Sbjct: 1041704 RRCRRVVRLGGGGSAAHAPRAP 1041769 Score = 28.9 bits (63), Expect = 3.7 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = -2 Query: 50 STTRIVPFGGGRSVGHAPRGPNIHGLPKGSLTGGCATG 87 +TTR G G HA + H LP+G+ T ATG Sbjct: 3649057 TTTRTAGAGAGAGFAHAA---SRHSLPRGAATAAAATG 3648953 >emb|FN649752.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG27 Length = 4309624 Score = 29.3 bits (64), Expect = 2.8 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = -2 Query: 48 YRSTTRIVPFGGGRSVGHAPRGPNIH 73 +R R VPFGGGR H P+ P++H Sbjct: 4075512 FRLVFRSVPFGGGRP--HPPQTPSLH 4075441 >emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG02 Length = 9289656 Score = 28.9 bits (63), Expect = 3.7 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -2 Query: 57 FGGGRSVGHAPRGPNIHGLPKGSLTGGC 84 +GG RSV + R + GLP + T GC Sbjct: 7063523 YGGSRSVRNVERRNGVQGLPTTTWTNGC 7063440 >emb|FN649738.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG13 Length = 3173470 Score = 28.9 bits (63), Expect = 3.7 Identities = 19/56 (33%), Positives = 24/56 (42%) Frame = +1 Query: 34 TLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIHGLPKGSLTGGCATGUR 89 TL+SS S H R P+G VG G +H +P+G GG G R Sbjct: 2061373 TLLSS---SAHDPYGRCAVLAYPWGASCGVGLDGMGAVLHDVPRGQRVGGTGGGQR 2061531 >emb|FN649756.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG31 Length = 577967 Score = 28.9 bits (63), Expect = 3.7 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = -3 Query: 26 RLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIHG 74 R++WL+ + +S P Q YR ++ V GG+SV +A G + G Sbjct: 279459 RVLWLWVTAMSASVPHEWSRQVYRLSSLFVGPPGGQSVKYAKIGRAVAG 279313 >emb|FN649728.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG03 Length = 7313625 Score = 28.5 bits (62), Expect = 4.8 Identities = 11/14 (78%), Positives = 11/14 (78%) Frame = -3 Query: 60 GRSVGHAPRGPNIH 73 G SVG APRGPN H Sbjct: 3728119 GESVGFAPRGPNFH 3728078 >emb|FN649735.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG10 Length = 4527641 Score = 28.5 bits (62), Expect = 4.8 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = -3 Query: 56 PFGGGRSVGHAPRGPNIHGLPKGSLTGGCATGUR 89 P G S G PR P+ P+G GGC R Sbjct: 3505131 PPAPGTSAGRTPRTPSPPSAPEGRCGGGCTRNRR 3505030 Score = 27.7 bits (60), Expect = 8.2 Identities = 14/48 (29%), Positives = 25/48 (52%) Frame = -1 Query: 27 LMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIHG 74 L+ +F + + P Q + ++TT +GG S+G RGP++ G Sbjct: 1534694 LVEIFLGKRIIARPAFQLQRPGQTTTTSKRYGGKCSIGKGRRGPSLIG 1534551 >emb|FN649744.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG19 Length = 3025835 Score = 28.5 bits (62), Expect = 4.8 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%) Frame = -3 Query: 12 SKPFSLVDFFL--SILRLMWLF-----FATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVG 64 S+ FSL + +L SIL L+ + F+ +++ P+ + + + R V F GGR +G Sbjct: 2514702 SRDFSLKEKYL*ISILALIVMQGPKV*FSASLNNPPLRSNQDLHVTD*RSVSF*GGRRLG 2514523 Query: 65 HAPRGPNIHGLPKGSLTGGCAT 86 H+P H + T G AT Sbjct: 2514522 HSPS----HRFGRAPATDGRAT 2514469 >emb|FN649750.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG25 Length = 4542878 Score = 28.5 bits (62), Expect = 4.8 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Frame = -3 Query: 17 LVDFFLSILRLMWLFFATLVSSEPVSQ--HVQEYRSTTR--IVPFGGGRSVGHAPRGPN 71 L+ FF+ L L WLF +T+ S V + H + +++TR +VP S H PR PN Sbjct: 1046190 LLLFFVWYLFLSWLFLSTVGYSRDVCRCTHRRRLQNSTRSDLVP---AHSPFHKPR*PN 1046023 Score = 27.7 bits (60), Expect = 8.2 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +3 Query: 13 KPFSLVDFFLSI---LRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRG 69 KP L FF S+ LRL + AT + P +H++ +R+T ++ F SV H R Sbjct: 2125353 KPS*LSSFFRSLPGPLRLSPVDVATTTAVMPSDEHIESHRATVTLLLF----SVLHDSRL 2125520 Query: 70 P 70 P Sbjct: 2125521 P 2125523 >emb|FN649726.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG01 Length = 3745584 Score = 27.7 bits (60), Expect = 8.2 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -3 Query: 29 WLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPR 68 W ATL + H+ + RS I+ GGG S H PR Sbjct: 3570679 WEENATLRPTNGAD*HLSQLRSRNTILWGGGGASTTHVPR 3570560 >emb|FN649729.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG04 Length = 5529539 Score = 27.7 bits (60), Expect = 8.2 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = +1 Query: 55 VPFGGGRSVGHAPRGPNIHGLPKGSLTGGCATG 87 VP G R H R + H LP G G CA G Sbjct: 4879858 VPAGAERLPPHRTRQVHAHELPSGI*EGSCAAG 4879956 >emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG17 Length = 5807719 Score = 27.7 bits (60), Expect = 8.2 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Frame = -1 Query: 58 GGGRSVGHAPRGPNIH-GLPKGSLTGGCATG 87 GGG + G RGPN G+ KG+ GG G Sbjct: 1979119 GGGGAAGSGARGPNRRIGVQKGAAAGGGGGG 1979027 Database: E.siliculosus/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 195,934,119 Number of sequences in database: 35 Lambda K H 0.323 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,115,965 Number of Sequences: 35 Number of extensions: 420790 Number of successful extensions: 4055 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 3275 Number of HSP's gapped (non-prelim): 2415 length of query: 89 length of database: 65,311,373 effective HSP length: 64 effective length of query: 25 effective length of database: 65,309,133 effective search space: 1632728325 effective search space used: 1632728325 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 59 (27.3 bits)