TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000053_1.0 # Protein # Selenoprotein K1 (SelK1) #
Anopheles gambiae # Complete
         (96 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genom...    28   6.3  

>emb|FN649742.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG17
          Length = 5807719

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 6       RNGAVQEAQPWGVDRIKGLIMGFFN 30
               R+  V+  +PW V+RIK   +GFFN
Sbjct: 2444663 RSHRVRSHRPWCVNRIKCSCLGFFN 2444737


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.332    0.146    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,373,527
Number of Sequences: 35
Number of extensions: 41173
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 7
length of query: 96
length of database: 65,311,373
effective HSP length: 71
effective length of query: 25
effective length of database: 65,308,888
effective search space: 1632722200
effective search space used: 1632722200
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 59 (27.3 bits)