TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000032_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Homo sapiens # Complete
         (392 letters)

Database: E.siliculosus/genome.fa 
           35 sequences; 195,934,119 total letters

Searching...................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genom...    44   0.002
emb|FN649745.1| Ectocarpus siliculosus strain Ec 32, whole genom...    32   4.8  
emb|FN649726.1| Ectocarpus siliculosus strain Ec 32, whole genom...    31   8.2  
emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genom...    31   8.2  

>emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG02
          Length = 9289656

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
 Frame = -1

Query: 57      LGAVMPRLGI--GMDTCVI--PLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLY 112
               LG V+ RLG+  G+D   +  P    G   V T D+    V DP++ G+IA  + LSD++
Sbjct: 3477552 LGRVLSRLGVAGGLDDAAVVAPPSEPGAVTVHTVDFFRSFVSDPFVFGQIAANHALSDVH 3477373

Query: 113     AM 114
               AM
Sbjct: 3477372 AM 3477367



 Score = 37.0 bits (84), Expect = 0.15
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 238     QEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAK 280
               Q A+ +M + N  AA ++    A A TD+TGFG+ GH   + +
Sbjct: 3476047 QPAVRSMLQSNGPAATVLRDHGARACTDVTGFGVAGHLAEMLR 3475919



 Score = 31.6 bits (70), Expect = 6.3
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -1

Query: 144     IIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQ--PNEFIMPDNAVPGDVLVLTK 201
               ++ G     +EAG S+ GG T     + LG     V +      +    A PGD LVLTK
Sbjct: 3476778 LLAGALKTLKEAGCSLVGGHTCEGADLALGLSVNGVARGGARSLLTKGGAAPGDALVLTK 3476599


>emb|FN649745.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG20
          Length = 1840930

 Score = 32.0 bits (71), Expect = 4.8
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +2

Query: 317     CPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIE 374
               C    GG  + LP+ + A+ CAE +S K       W++G+     R   II+K R  E
Sbjct: 1431377 CYSDGGGTWVTLPKVKRAKACAEGESHKRRGSGVLWLVGLTGL-QRVRGIINKERHAE 1431547


>emb|FN649726.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG01
          Length = 3745584

 Score = 31.2 bits (69), Expect = 8.2
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 57      LGAVMPRLGIGMDTCVIPLRHGGLSLV 83
               LG  +PRLG G D CV  ++ GG SL+
Sbjct: 3541323 LGDSVPRLGTGADRCVRAVKRGGSSLL 3541243


>emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence
               assembly, chromosome LG26
          Length = 7107661

 Score = 31.2 bits (69), Expect = 8.2
 Identities = 20/63 (31%), Positives = 25/63 (39%)
 Frame = -2

Query: 151     AAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVA 210
               AA+ AG   T G   +N    L   A +    N    PD +V G     T P+GT    A
Sbjct: 5934150 AAQPAGGVSTKGPGDVNDQAALADAAASAASANSSGSPDESVVGGARAPTPPVGTHAVQA 5933971

Query: 211     VHQ 213
                 Q
Sbjct: 5933970 PQQ 5933962


  Database: E.siliculosus/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 195,934,119
  Number of sequences in database:  35
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,872,525
Number of Sequences: 35
Number of extensions: 1572056
Number of successful extensions: 6185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5935
Number of HSP's gapped (non-prelim): 2240
length of query: 392
length of database: 65,311,373
effective HSP length: 115
effective length of query: 277
effective length of database: 65,307,348
effective search space: 18090135396
effective search space used: 18090135396
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)