TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000047_1.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Drosophila melanogaster # Complete (398 letters) Database: E.siliculosus/genome.fa 35 sequences; 195,934,119 total letters Searching...................................done Score E Sequences producing significant alignments: (bits) Value emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genom... 42 0.004 emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genom... 33 2.9 emb|FN649755.1| Ectocarpus siliculosus strain Ec 32, whole genom... 32 6.4 emb|FN649740.1| Ectocarpus siliculosus strain Ec 32, whole genom... 31 8.4 >emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG02 Length = 9289656 Score = 42.4 bits (98), Expect = 0.004 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Frame = -1 Query: 79 LNVAIPRIGI--GLDCSVI--PLRHGGLCLVQTTDFFYPIVDDPYMMGKIACANVLSDLY 134 L + R+G+ GLD + + P G V T DFF V DP++ G+IA + LSD++ Sbjct: 3477552 LGRVLSRLGVAGGLDDAAVVAPPSEPGAVTVHTVDFFRSFVSDPFVFGQIAANHALSDVH 3477373 Query: 135 AM 136 AM Sbjct: 3477372 AM 3477367 Score = 35.4 bits (80), Expect = 0.45 Identities = 15/35 (42%), Positives = 22/35 (62%) Frame = -3 Query: 262 AMNSMARLNRVAARLMHKYNAHGATDITGFGLLGH 296 A+ SM + N AA ++ + A TD+TGFG+ GH Sbjct: 3476041 AVRSMLQSNGPAATVLRDHGARACTDVTGFGVAGH 3475937 >emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG26 Length = 7107661 Score = 32.7 bits (73), Expect = 2.9 Identities = 23/70 (32%), Positives = 31/70 (44%) Frame = -2 Query: 173 SALEAGTTVTGGQSVVNPWCTIGGVASTICQPNEYIVPDNAVVGDVLVLTKPLGTQVAVN 232 +A AG T G VN + A++ N PD +VVG T P+GT AV Sbjct: 5934150 AAQPAGGVSTKGPGDVNDQAALADAAASAASANSSGSPDESVVGGARAPTPPVGTH-AVQ 5933974 Query: 233 AHQWIDQPER 242 A Q Q ++ Sbjct: 5933973 APQQQQQQQQ 5933944 >emb|FN649755.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG30 Length = 4005922 Score = 31.6 bits (70), Expect = 6.4 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 9/57 (15%) Frame = -3 Query: 219 LVLTKPLGTQVAVNAH-----QWIDQPERWNRIKLVVSE----EDVRKAYHRAMNSM 266 LV +KPLGT H QW + PE+W++ +V E R YHR + ++ Sbjct: 3526043 LVASKPLGTNFNTWMHPIYIEQWPNCPEQWHKFSSLVPPTLYGEGRRTVYHRGVMAL 3525873 >emb|FN649740.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG15 Length = 5788546 Score = 31.2 bits (69), Expect = 8.4 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -3 Query: 232 NAHQWIDQPERWNRIKLVVSEEDVRKAYHRAMNSMARLNRVA 273 N+ QW D+ WN IK +S E+V ++R R +R A Sbjct: 116519 NSSQWCDEQRNWNCIKYRISPENV--CHNRRQGDFPRAHRYA 116400 Database: E.siliculosus/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 195,934,119 Number of sequences in database: 35 Lambda K H 0.321 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,503,066 Number of Sequences: 35 Number of extensions: 1548800 Number of successful extensions: 7096 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 6916 Number of HSP's gapped (non-prelim): 916 length of query: 398 length of database: 65,311,373 effective HSP length: 115 effective length of query: 283 effective length of database: 65,307,348 effective search space: 18481979484 effective search space used: 18481979484 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 68 (30.8 bits)