TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000055_1.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Anopheles gambiae # Complete (396 letters) Database: E.siliculosus/genome.fa 35 sequences; 195,934,119 total letters Searching...................................done Score E Sequences producing significant alignments: (bits) Value emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genom... 42 0.006 emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genom... 34 0.99 emb|FN649735.1| Ectocarpus siliculosus strain Ec 32, whole genom... 33 2.9 emb|FN649740.1| Ectocarpus siliculosus strain Ec 32, whole genom... 31 8.3 >emb|FN649727.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG02 Length = 9289656 Score = 41.6 bits (96), Expect = 0.006 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%) Frame = -1 Query: 83 RIGI--GLDCSVI--PLRHGGLCMVQTTDFFYPIVDDPYMMGKIACANVLSDLYAM 134 R+G+ GLD + + P G V T DFF V DP++ G+IA + LSD++AM Sbjct: 3477534 RLGVAGGLDDAAVVAPPSEPGAVTVHTVDFFRSFVSDPFVFGQIAANHALSDVHAM 3477367 Score = 34.7 bits (78), Expect = 0.75 Identities = 16/35 (45%), Positives = 22/35 (62%) Frame = -3 Query: 260 AMDSMSRLNRVAARLMHKYNAHGATDVTGFGLLGH 294 A+ SM + N AA ++ + A TDVTGFG+ GH Sbjct: 3476041 AVRSMLQSNGPAATVLRDHGARACTDVTGFGVAGH 3475937 >emb|FN649751.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG26 Length = 7107661 Score = 34.3 bits (77), Expect = 0.99 Identities = 21/64 (32%), Positives = 30/64 (46%) Frame = +3 Query: 44 DLKGRCCKVPKEVLEKLVSSLQQDYMQDPDQPFMPMSSPRIGIGLDCSVIPLRHGGLCMV 103 D GRC + + V E+L S+ QD++ QP +SS L C+ L M Sbjct: 3544566 DFAGRCRRAERGVCERLTSTFHQDFLSSCKQPSTFLSSKIFRAILQCN--------LFMT 3544721 Query: 104 QTTD 107 Q+TD Sbjct: 3544722 QSTD 3544733 >emb|FN649735.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG10 Length = 4527641 Score = 32.7 bits (73), Expect = 2.9 Identities = 20/43 (46%), Positives = 21/43 (48%) Frame = +2 Query: 11 HLELTGNTGMVLRRPFDPTAHDLDASFRLTRFADLKGRCCKVP 53 HL L + M RRP P H DASF L GRCCK P Sbjct: 3110948 HLTLL-TSEMTRRRPPQPFLHHADASFSF-----LSGRCCKPP 3111058 >emb|FN649740.1| Ectocarpus siliculosus strain Ec 32, whole genome shotgun sequence assembly, chromosome LG15 Length = 5788546 Score = 31.2 bits (69), Expect = 8.3 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -3 Query: 230 NAHQWLDQSERWNRIKLVVSEEDVRKAYHRAMDSMSRLNRVA 271 N+ QW D+ WN IK +S E+V ++R R +R A Sbjct: 116519 NSSQWCDEQRNWNCIKYRISPENV--CHNRRQGDFPRAHRYA 116400 Database: E.siliculosus/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 195,934,119 Number of sequences in database: 35 Lambda K H 0.322 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,676,716 Number of Sequences: 35 Number of extensions: 1555791 Number of successful extensions: 6797 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 6543 Number of HSP's gapped (non-prelim): 780 length of query: 396 length of database: 65,311,373 effective HSP length: 115 effective length of query: 281 effective length of database: 65,307,348 effective search space: 18351364788 effective search space used: 18351364788 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 68 (30.8 bits)