TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000112_1.0 # Protein # Selenoprotein K (SelK) # Mus
musculus # Complete
         (94 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol...    27   0.85 
gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol...    26   1.4  
gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    24   4.2  
gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whol...    24   5.5  
gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol...    23   9.4  
gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    23   9.4  

>gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun
              sequence
          Length = 1104417

 Score = 26.6 bits (57), Expect = 0.85
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 20     VSFLTDFFWGIAEFVVFFFKTLLQQ 44
              + F   +F  + +F++FFFKTL +Q
Sbjct: 591727 IKF*VIYFVDLGKFIIFFFKTLNKQ 591653


>gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun
              sequence
          Length = 875659

 Score = 25.8 bits (55), Expect = 1.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 6      NGQVLDSRNQSPWRVSFLTDFFWGIAEFVVFFF 38
              NG++L  ++     + + +DF+ G+   V+FFF
Sbjct: 847573 NGRILLKKSIQVKFLPYFSDFY*GVYSLVIFFF 847475



 Score = 23.5 bits (49), Expect = 7.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 3      YISNGQVLDSRNQSPWRVSFLTDFFWGIAEFVVFF 37
              YI N   + SRN S +  SF+ D  W +    +FF
Sbjct: 760342 YIYNFNFIISRNISLYFKSFIIDSHWPMPFKWIFF 760238


>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun
              sequence
          Length = 1332857

 Score = 24.3 bits (51), Expect = 4.2
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 20     VSFLTDFFW 28
              +SFLTDFFW
Sbjct: 628363 ISFLTDFFW 628389


>gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whole genome shotgun
              sequence
          Length = 985969

 Score = 23.9 bits (50), Expect = 5.5
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -2

Query: 4      ISNGQVL---DSRNQSPWRVSFLTDFFWGIAEFVVF-FFKTLL 42
              I NG  L   D   Q  WR+ F  ++   I  F +F FF TL+
Sbjct: 262968 IENGTTLYFKDLGVQISWRLVFFIEYLGPIIIFPIFYFFPTLI 262840


>gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun
             sequence
          Length = 1344712

 Score = 23.1 bits (48), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 20    VSFLTDFFWGIAEFVVFF 37
             +SF+TDFF  +  F+  F
Sbjct: 16189 ISFITDFFKAVLNFIESF 16136


>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 23.1 bits (48), Expect = 9.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 22     FLTDFFWGIAEFVVFFFKTLL 42
              F  +FF  IA  ++FF  TL+
Sbjct: 710403 FFLNFFLSIALLIMFFLSTLI 710465


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.332    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 641,099
Number of Sequences: 8
Number of extensions: 6327
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 31
length of query: 94
length of database: 3,034,108
effective HSP length: 69
effective length of query: 25
effective length of database: 3,033,556
effective search space: 75838900
effective search space used: 75838900
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 48 (23.1 bits)