TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo sapiens # Complete (94 letters) Database: C.parvum/genome.fa 8 sequences; 9,102,324 total letters Searching........done Score E Sequences producing significant alignments: (bits) Value gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol... 25 1.9 gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whol... 25 2.5 gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol... 25 2.5 gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whol... 24 4.2 gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol... 24 4.2 gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol... 23 7.2 >gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun sequence Length = 1104417 Score = 25.4 bits (54), Expect = 1.9 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +3 Query: 19 RLSLITDFFWGIAEFVVLFFKT 40 +L+L FFW I F ++FF+T Sbjct: 17607 KLNLSLFFFWLIGTFTLIFFQT 17672 Score = 24.3 bits (51), Expect = 4.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 12 SRSQSPWRLSLITDFFWGIAEFVVLFF 38 SRS RLSL+ DF + I ++ FF Sbjct: 243208 SRSNKISRLSLVNDFTFNIFASLLFFF 243288 Score = 23.5 bits (49), Expect = 7.2 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -2 Query: 20 LSLITDFFWGIAEFVVLFFKTLLQQDV 46 L LI+ FF+ F LFFK L++ + Sbjct: 208637 LLLISRFFFPFFFFCFLFFKILIESPI 208557 >gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whole genome shotgun sequence Length = 1278458 Score = 25.0 bits (53), Expect = 2.5 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +2 Query: 33 FVVLFFKTLLQQDVKKRRSYGNSS 56 F+VLF + LL KK+ YGN+S Sbjct: 625607 FIVLF*EKLLCFTAKKQLKYGNTS 625678 >gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun sequence Length = 1332857 Score = 25.0 bits (53), Expect = 2.5 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -2 Query: 34 VVLFFKTLLQQDVKKRRSYGNSSDSRY 60 VV F+T+LQ+D R+ Y N S Y Sbjct: 1068565 VVWSFETILQEDGFGRKKYANGSGIYY 1068485 >gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whole genome shotgun sequence Length = 1080900 Score = 24.3 bits (51), Expect = 4.2 Identities = 10/22 (45%), Positives = 13/22 (59%) Frame = -3 Query: 18 WRLSLITDFFWGIAEFVVLFFK 39 W+LS F GI FV LF++ Sbjct: 666595 WKLSFFYRAFEGINHFVTLFYR 666530 Score = 23.9 bits (50), Expect = 5.5 Identities = 9/18 (50%), Positives = 14/18 (77%) Frame = -1 Query: 21 SLITDFFWGIAEFVVLFF 38 S++T+FF+ I F+VL F Sbjct: 681522 SILTNFFYFIFSFIVLIF 681469 Score = 23.1 bits (48), Expect = 9.4 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +2 Query: 39 KTLLQQDVKKRRSYGN 54 KTLL++DVK S GN Sbjct: 178061 KTLLERDVKFEESMGN 178108 Score = 23.1 bits (48), Expect = 9.4 Identities = 8/23 (34%), Positives = 14/23 (60%) Frame = +2 Query: 21 SLITDFFWGIAEFVVLFFKTLLQ 43 SLI D +WG +++ L + +Q Sbjct: 338504 SLIHDMYWGCCQYIFLVWNFHIQ 338572 >gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun sequence Length = 875659 Score = 24.3 bits (51), Expect = 4.2 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = -1 Query: 6 NGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFF 38 NG++L +S L +DF+ G+ V+ FF Sbjct: 847573 NGRILLKKSIQVKFLPYFSDFY*GVYSLVIFFF 847475 >gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun sequence Length = 1344712 Score = 23.5 bits (49), Expect = 7.2 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +2 Query: 4 ISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFK 39 I N L SR + WRL +I + + F ++FF+ Sbjct: 1177601 ILNISKLKSRIIAFWRLKIIYIIIFSVFPFHIVFFR 1177708 Database: C.parvum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 9,102,324 Number of sequences in database: 8 Lambda K H 0.325 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 756,489 Number of Sequences: 8 Number of extensions: 8442 Number of successful extensions: 45 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 28 Number of HSP's gapped (non-prelim): 31 length of query: 94 length of database: 3,034,108 effective HSP length: 69 effective length of query: 25 effective length of database: 3,033,556 effective search space: 75838900 effective search space used: 75838900 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 48 (23.1 bits)