TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) Trypanosoma cruzi strain CL Brener tcruzi_1047053508727, whole genome shotgun sequence:[translate(1)] (89 letters) Database: C.parvum/genome.fa 8 sequences; 9,102,324 total letters Searching........done Score E Sequences producing significant alignments: (bits) Value gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol... 26 1.1 gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol... 24 5.5 gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whol... 24 5.5 gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol... 23 7.2 gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol... 23 9.4 gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whol... 23 9.4 gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whol... 23 9.4 >gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun sequence Length = 875659 Score = 26.2 bits (56), Expect = 1.1 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = -1 Query: 19 DFFLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVG 64 +FFL IL + LF+ + V ++Q YR +V RS+G Sbjct: 49927 EFFLHILYFLILFY*CIHKCRSVIIYIQFYRRKIHLVAMQKVRSLG 49790 >gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun sequence Length = 1332857 Score = 23.9 bits (50), Expect = 5.5 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = -2 Query: 15 FSLVDFFLSILRLMWLF 31 F L +F+LSI L+WL+ Sbjct: 548065 FELKEFYLSIQVLLWLY 548015 >gb|CM000432.1| Cryptosporidium parvum Iowa II chromosome 4, whole genome shotgun sequence Length = 1104417 Score = 23.9 bits (50), Expect = 5.5 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +2 Query: 12 SKPFSLVDFFLSILRLMWLF 31 S PF L FFLS+L +LF Sbjct: 423962 SSPFPLFQFFLSLLFQSFLF 424021 Score = 23.1 bits (48), Expect = 9.4 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = -1 Query: 21 FLSILRLMWLFF 32 FLS L L+WLFF Sbjct: 57669 FLSFLFLLWLFF 57634 >gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun sequence Length = 1099352 Score = 23.5 bits (49), Expect = 7.2 Identities = 15/43 (34%), Positives = 25/43 (58%) Frame = +3 Query: 15 FSLVDFFLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPF 57 F L+ FFL++L + LFF S P+ +RS++ ++PF Sbjct: 186714 FVLIFFFLTLLFFLTLFF----SFHPL------FRSSSFLLPF 186812 Score = 23.1 bits (48), Expect = 9.4 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +3 Query: 18 VDFFLSILRLMWLFFATLVSS 38 ++FFLSI L+ F +TL+ S Sbjct: 710409 LNFFLSIALLIMFFLSTLILS 710471 >gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun sequence Length = 1344712 Score = 23.1 bits (48), Expect = 9.4 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = -2 Query: 7 GRVVDSKPFSLVDFFLSILRLMWLFFATLV 36 GRV+ + SLV+ F + +W+F TL+ Sbjct: 292335 GRVLTACIVSLVEKFDPLFSPLWIFAVTLL 292246 >gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whole genome shotgun sequence Length = 1080900 Score = 23.1 bits (48), Expect = 9.4 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = -2 Query: 13 KPFSLVDFFLSILRL 27 K F+L+DFF ILR+ Sbjct: 301610 KSFNLIDFFSCILRI 301566 >gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whole genome shotgun sequence Length = 985969 Score = 23.1 bits (48), Expect = 9.4 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -2 Query: 3 YVANGRVVDSKPFSLV--DFFLSILRLMWLFFATLVSSEPVSQHVQEYRS 50 Y+ N ++++ + V DFFLSI++++ L L+S+ ++Y S Sbjct: 262176 YLFNLNLINTSEYLRVSFDFFLSIIKVIRLVDILLMSTRDNKNFRRKYMS 262027 Database: C.parvum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 9,102,324 Number of sequences in database: 8 Lambda K H 0.323 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 788,139 Number of Sequences: 8 Number of extensions: 9087 Number of successful extensions: 75 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 58 Number of HSP's gapped (non-prelim): 46 length of query: 89 length of database: 3,034,108 effective HSP length: 64 effective length of query: 25 effective length of database: 3,033,596 effective search space: 75839900 effective search space used: 75839900 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 48 (23.1 bits)