TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000053_1.0 # Protein # Selenoprotein K1 (SelK1) #
Anopheles gambiae # Complete
         (96 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol...    24   5.5  
gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whol...    23   7.2  
gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol...    23   9.4  

>gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun
              sequence
          Length = 875659

 Score = 23.9 bits (50), Expect = 5.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 24     LIMGFFNFLVMFFRTMLDF 42
              +I+ FFNF  +F  +++DF
Sbjct: 106257 IIITFFNFSTLFLPSLIDF 106201


>gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whole genome shotgun
              sequence
          Length = 1080900

 Score = 23.5 bits (49), Expect = 7.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 24     LIMGFFNFLVMFFRTMLDFQ 43
              L+MG  NFLV+FF  +LD++
Sbjct: 868440 LMMG--NFLVIFFLLLLDYK 868387


>gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun sequence
          Length = 1344712

 Score = 23.1 bits (48), Expect = 9.4
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = -2

Query: 17      GVDRIKGLIMGFFNFLVMFF--RTMLDF 42
               G+D  K LIMG F+   M     T+L+F
Sbjct: 1121199 GIDIFKSLIMGIFHIQSMVHNDETLLEF 1121116


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.332    0.146    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,249
Number of Sequences: 8
Number of extensions: 3166
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 7
length of query: 96
length of database: 3,034,108
effective HSP length: 71
effective length of query: 25
effective length of database: 3,033,540
effective search space: 75838500
effective search space used: 75838500
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 48 (23.1 bits)