TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whol...    28   0.56 
gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whol...    25   3.7  
gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whol...    25   4.8  
gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whol...    24   8.1  

>gb|CM000434.1| Cryptosporidium parvum Iowa II chromosome 6, whole genome shotgun
             sequence
          Length = 1332857

 Score = 27.7 bits (60), Expect = 0.56
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 3     DRKENKKNADYEIFLRDRKLKYEKIRKRNALHNKFIL 39
             ++ E KKN + +   ++ +++Y KI K + L+NKF +
Sbjct: 74747 NKSELKKNEEIQNNNKNSRIRYRKIVKWSNLYNKFYI 74637


>gb|CM000435.1| Cryptosporidium parvum Iowa II chromosome 7, whole genome shotgun
              sequence
          Length = 1278458

 Score = 25.0 bits (53), Expect = 3.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 4      RKENKKNADYEIFLRDRKLKYEKIRKRNALHNK 36
              RK  KK  + EI      +KYEK RK+N  +N+
Sbjct: 265138 RKVRKKEKNVEI------VKYEKERKKNMSNNR 265058


>gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whole genome shotgun
              sequence
          Length = 1080900

 Score = 24.6 bits (52), Expect = 4.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 54     TVINILAIFFKTLLGQSNTSQSS 76
              ++IN L  FF  ++GQS T+ +S
Sbjct: 880477 SIIN*LFFFFLNIIGQSRTNSNS 880545


>gb|CM000436.1| Cryptosporidium parvum Iowa II chromosome 8, whole genome shotgun
              sequence
          Length = 1344712

 Score = 23.9 bits (50), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 16     FLRDRKLKYEKIRKRNALHNKF 37
              FL + K KY+K  K+N L++ F
Sbjct: 441619 FLVEYKTKYDK*AKKNLLYSSF 441684


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.318    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 782,624
Number of Sequences: 8
Number of extensions: 7210
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 22
length of query: 116
length of database: 3,034,108
effective HSP length: 79
effective length of query: 37
effective length of database: 3,033,476
effective search space: 112238612
effective search space used: 112238612
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)