TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000047_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Drosophila melanogaster # Complete
         (398 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whol...    28   4.6  
gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whol...    27   7.9  

>gb|CM000431.1| Cryptosporidium parvum Iowa II chromosome 3, whole genome shotgun
              sequence
          Length = 1099352

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 112    YPIVDDPYMMGKIACANVLSDLYA-MGVTDCDNMLM 146
              YP + DP ++ K +  N+LS LY  +  +D  N+++
Sbjct: 350322 YPSISDPGLLRKASIYNILSKLYVKLPYSDLSNIIL 350215


>gb|CM000429.1| Cryptosporidium parvum Iowa II chromosome 1, whole genome shotgun
              sequence
          Length = 875659

 Score = 26.9 bits (58), Expect = 7.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 72     QDQEPQFLNVAIPRIGIGLDCSVIPLRHGGLCLVQTTDFFYPI 114
              +D + + LNV I ++ +  D S+  + +  +  ++TTD  Y I
Sbjct: 415954 EDGKKELLNVEIDQLSLKNDFSMFAVPYNKMMWIKTTDIHYRI 415826


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,138,599
Number of Sequences: 8
Number of extensions: 38650
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 19
length of query: 398
length of database: 3,034,108
effective HSP length: 94
effective length of query: 304
effective length of database: 3,033,356
effective search space: 922140224
effective search space used: 922140224
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)