TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000112_1.0 # Protein # Selenoprotein K (SelK) # Mus musculus # Complete (94 letters) Database: C.owczarzaki/genome.fa 89 sequences; 28,043,798 total letters Searching........................................................................................done Score E Sequences producing significant alignments: (bits) Value supercontig_1.10 of Capsaspora owczarzaki ATCC 30864 28 0.69 supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 28 1.2 supercontig_1.7 of Capsaspora owczarzaki ATCC 30864 27 1.5 supercontig_1.4 of Capsaspora owczarzaki ATCC 30864 27 2.6 supercontig_1.5 of Capsaspora owczarzaki ATCC 30864 26 4.5 supercontig_1.3 of Capsaspora owczarzaki ATCC 30864 26 4.5 supercontig_1.19 of Capsaspora owczarzaki ATCC 30864 25 7.6 supercontig_1.11 of Capsaspora owczarzaki ATCC 30864 25 7.6 supercontig_1.17 of Capsaspora owczarzaki ATCC 30864 25 9.9 supercontig_1.12 of Capsaspora owczarzaki ATCC 30864 25 9.9 >supercontig_1.10 of Capsaspora owczarzaki ATCC 30864 Length = 1357310 Score = 28.5 bits (62), Expect = 0.69 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +1 Query: 17 PWRVSFLTDFFWGIAEFVVFF 37 PW V + TD+FW + FV++F Sbjct: 971638 PW*VVYWTDWFWRVGFFVLWF 971700 >supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 Length = 2668053 Score = 27.7 bits (60), Expect = 1.2 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = -1 Query: 5 SNGQVLDSRNQSPWRVSFLTD--FFWGIAEFVVFFF 38 SNG+ DSR+ W L FFW F VFFF Sbjct: 1702494 SNGRAADSRSDG-WAFESLFSHIFFWVFVFFFVFFF 1702390 >supercontig_1.7 of Capsaspora owczarzaki ATCC 30864 Length = 1544042 Score = 27.3 bits (59), Expect = 1.5 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = +2 Query: 21 SFLTDFFWGIAEFVVFFFKTL 41 S L FWG+ FVVFFF +L Sbjct: 118985 SVLVLIFWGVWFFVVFFFTSL 119047 >supercontig_1.4 of Capsaspora owczarzaki ATCC 30864 Length = 2141673 Score = 26.6 bits (57), Expect = 2.6 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 17 PWRVSFLTDFFWGIAEFVVFF 37 PW V+ L FF+ I F++FF Sbjct: 906396 PWMVALLVFFFFRIGFFILFF 906458 >supercontig_1.5 of Capsaspora owczarzaki ATCC 30864 Length = 1755934 Score = 25.8 bits (55), Expect = 4.5 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%) Frame = +3 Query: 12 SRNQSPWRVSFLTDFFWGIAEFVV---FFFKTLL 42 SR ++P+R F FF F V FFFKTLL Sbjct: 46356 SRVRAPYRAVFFLFFFVFFLFFFVLSVFFFKTLL 46457 >supercontig_1.3 of Capsaspora owczarzaki ATCC 30864 Length = 2526540 Score = 25.8 bits (55), Expect = 4.5 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 10 LDSRNQSPWRVSFLTDFFWGIAEFVVFFF 38 +D+R + RVS ++FFW F FFF Sbjct: 667671 VDARKGARVRVSSQSNFFWCFFFFFFFFF 667585 Score = 25.0 bits (53), Expect = 7.6 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 2/23 (8%) Frame = -3 Query: 18 WRVSFLTDFFWGIAEFV--VFFF 38 WRV F FFW I F+ FFF Sbjct: 2490061 WRVPFWFFFFWPIRGFIDDCFFF 2489993 >supercontig_1.19 of Capsaspora owczarzaki ATCC 30864 Length = 161746 Score = 25.0 bits (53), Expect = 7.6 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = +1 Query: 4 ISNGQVLDSRNQSPWRVSFLTDFFWGIAEFVVFFFKTLLQQD 45 ++NG+ SRN++ W VS TD + E V LL+ D Sbjct: 155167 LTNGEASFSRNKTIWEVSEATD--GSLLEVVAVSRPFLLEDD 155286 >supercontig_1.11 of Capsaspora owczarzaki ATCC 30864 Length = 1292811 Score = 25.0 bits (53), Expect = 7.6 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +1 Query: 11 DSRNQSPWRVSFLTDFFWGIAEFVVFFFKTL 41 DS + S WR S++ FF+G + F++ F ++ Sbjct: 655837 DSIHASNWRSSWVFFFFFGSSSFLLLPFGSI 655929 >supercontig_1.17 of Capsaspora owczarzaki ATCC 30864 Length = 792894 Score = 24.6 bits (52), Expect = 9.9 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +1 Query: 7 GQVLDSRNQSPWRVSFLTDFF 27 G VLD N P+R+ F FF Sbjct: 81424 GDVLDDPNNDPYRIMFDMTFF 81486 >supercontig_1.12 of Capsaspora owczarzaki ATCC 30864 Length = 1052152 Score = 24.6 bits (52), Expect = 9.9 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 6/28 (21%) Frame = -3 Query: 17 PWRV------SFLTDFFWGIAEFVVFFF 38 PW V + DFFWG V FFF Sbjct: 875234 PWAVLGETLMDLVWDFFWGGVVVVFFFF 875151 Database: C.owczarzaki/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,043,798 Number of sequences in database: 89 Lambda K H 0.332 0.142 0.451 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,917,100 Number of Sequences: 89 Number of extensions: 23738 Number of successful extensions: 343 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 302 Number of HSP's gapped (non-prelim): 119 length of query: 94 length of database: 9,347,932 effective HSP length: 69 effective length of query: 25 effective length of database: 9,341,791 effective search space: 233544775 effective search space used: 233544775 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 52 (24.6 bits)