TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo sapiens # Complete (94 letters) Database: C.owczarzaki/genome.fa 89 sequences; 28,043,798 total letters Searching........................................................................................done Score E Sequences producing significant alignments: (bits) Value supercontig_1.1 of Capsaspora owczarzaki ATCC 30864 28 1.2 supercontig_1.8 of Capsaspora owczarzaki ATCC 30864 27 1.5 supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 26 3.4 supercontig_1.11 of Capsaspora owczarzaki ATCC 30864 25 5.8 supercontig_1.15 of Capsaspora owczarzaki ATCC 30864 25 7.6 supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 25 7.6 supercontig_1.7 of Capsaspora owczarzaki ATCC 30864 25 7.6 >supercontig_1.1 of Capsaspora owczarzaki ATCC 30864 Length = 3794667 Score = 27.7 bits (60), Expect = 1.2 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +1 Query: 22 LITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSS 56 L+ FF+ + F FFK LL DV RS G+ S Sbjct: 2934883 LLCAFFFSRSFFFFFFFKMLLLSDVSFARSMGSFS 2934987 >supercontig_1.8 of Capsaspora owczarzaki ATCC 30864 Length = 1512001 Score = 27.3 bits (59), Expect = 1.5 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 21 SLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRYD 61 SL + WG+ +L + LL+ R+S G+S SR+D Sbjct: 470631 SLTSRTVWGLIRLAMLERRRLLKHSK*TRQSLGSSKASRFD 470753 Score = 27.3 bits (59), Expect = 1.5 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -3 Query: 21 SLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRYD 61 SL + WG+ +L + LL+ R+S G+S SR+D Sbjct: 492029 SLTSRTVWGLIRLAMLERRRLLKHSK*TRQSLGSSKASRFD 491907 >supercontig_1.2 of Capsaspora owczarzaki ATCC 30864 Length = 2668053 Score = 26.2 bits (56), Expect = 3.4 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Frame = -1 Query: 5 SNGQVLDSRSQSPWRLSLITD--FFWGIAEFVVLFF 38 SNG+ DSRS W + FFW F V FF Sbjct: 1702494 SNGRAADSRSDG-WAFESLFSHIFFWVFVFFFVFFF 1702390 Score = 25.0 bits (53), Expect = 7.6 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = +1 Query: 11 DSRSQSPWRLSLITDFFWGIAE-FVVLFFKTLLQQDVKKRRSYGNSSDSRYD 61 + RSQ + L + + FFW +++ F++L +T ++ S S S+ + Sbjct: 1200526 EKRSQLEFSLCICSFFFWIVSQLFLLLSLQTTSNSTTRRSTSSSKSRSSQLE 1200681 >supercontig_1.11 of Capsaspora owczarzaki ATCC 30864 Length = 1292811 Score = 25.4 bits (54), Expect = 5.8 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +1 Query: 11 DSRSQSPWRLSLITDFFWGIAEFVVLFFKTL 41 DS S WR S + FF+G + F++L F ++ Sbjct: 655837 DSIHASNWRSSWVFFFFFGSSSFLLLPFGSI 655929 >supercontig_1.15 of Capsaspora owczarzaki ATCC 30864 Length = 930169 Score = 25.0 bits (53), Expect = 7.6 Identities = 15/47 (31%), Positives = 19/47 (40%) Frame = -3 Query: 16 SPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSDSRYDD 62 S W L + F GIA V FK Q + SY +S + D Sbjct: 647714 SQWALKPHSVFVLGIASRAVFIFKPQCMQPSLQEASYSHSVQPKTSD 647574 >supercontig_1.13 of Capsaspora owczarzaki ATCC 30864 Length = 955311 Score = 25.0 bits (53), Expect = 7.6 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -2 Query: 3 YISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTL 41 Y+S ++ DSRS SP + FF ++ +VL + L Sbjct: 10637 YVSIRKITDSRSPSPLTFGQMLVFFVLLSHLLVLVYVIL 10521 >supercontig_1.7 of Capsaspora owczarzaki ATCC 30864 Length = 1544042 Score = 25.0 bits (53), Expect = 7.6 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +2 Query: 21 SLITDFFWGIAEFVVLFFKTL 41 S++ FWG+ FVV FF +L Sbjct: 118985 SVLVLIFWGVWFFVVFFFTSL 119047 Score = 25.0 bits (53), Expect = 7.6 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +1 Query: 8 QVLDSRSQSPWRLSLITDFFWGIAEFVVLF 37 ++L RS S WR SL T W I+ + F Sbjct: 246499 RLLLHRSCSTWRASLTTGSSWAISSATISF 246588 Database: C.owczarzaki/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,043,798 Number of sequences in database: 89 Lambda K H 0.325 0.138 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,215,036 Number of Sequences: 89 Number of extensions: 23682 Number of successful extensions: 173 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 151 Number of HSP's gapped (non-prelim): 53 length of query: 94 length of database: 9,347,932 effective HSP length: 69 effective length of query: 25 effective length of database: 9,341,791 effective search space: 233544775 effective search space used: 233544775 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 52 (24.6 bits)