TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000112_1.0 # Protein # Selenoprotein K (SelK) # Mus
musculus # Complete
         (94 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989730.1| Cryptosporidium muris RN66 scf_1106632373475 geno...    25   2.5  
gb|DS989727.1| Cryptosporidium muris RN66 scf_1106632353999 geno...    24   4.3  

>gb|DS989730.1| Cryptosporidium muris RN66 scf_1106632373475 genomic scaffold, whole
              genome shotgun sequence
          Length = 723783

 Score = 25.0 bits (53), Expect = 2.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 20     VSFLTDFFWGIAEFV 34
              V FLTDF W   EF+
Sbjct: 424409 VHFLTDFIWNFCEFL 424365


>gb|DS989727.1| Cryptosporidium muris RN66 scf_1106632353999 genomic scaffold, whole
              genome shotgun sequence
          Length = 1306717

 Score = 24.3 bits (51), Expect = 4.3
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 20     VSFLTDF-FWGIAEFVVFFFKTLLQ 43
              +  LT F FWGIA  VV  F T+L+
Sbjct: 609039 IIMLTIFIFWGIAS*VVIRFSTILR 609113


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.332    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 594,362
Number of Sequences: 84
Number of extensions: 5311
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 4
length of query: 94
length of database: 3,081,750
effective HSP length: 69
effective length of query: 25
effective length of database: 3,075,954
effective search space: 76898850
effective search space used: 76898850
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 48 (23.1 bits)