TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000044_1.0 # Protein # Selenoprotein K1 (SelK1) #
Drosophila melanogaster # Complete
         (110 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989727.1| Cryptosporidium muris RN66 scf_1106632353999 geno...    27   0.84 
gb|DS989734.1| Cryptosporidium muris RN66 scf_1106632354001 geno...    25   3.2  
gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 geno...    24   5.5  

>gb|DS989727.1| Cryptosporidium muris RN66 scf_1106632353999 genomic scaffold, whole
              genome shotgun sequence
          Length = 1306717

 Score = 26.9 bits (58), Expect = 0.84
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 13     KRPWDWRRIVELFVGIWFAIKQLFLTFLAPFTG 45
              K PWD ++I  L+V   F I +LFL  +  ++G
Sbjct: 621570 KYPWDLKKIENLYVKENFDILKLFLLNVQNYSG 621472


>gb|DS989734.1| Cryptosporidium muris RN66 scf_1106632354001 genomic scaffold, whole
              genome shotgun sequence
          Length = 406819

 Score = 25.0 bits (53), Expect = 3.2
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 18     WRRIVELFVGIWFAIKQLF--LTFLAPFTGNN 47
              WR +V ++V ++FAIK+    LT L   TGN+
Sbjct: 289626 WREVV*VYVALFFAIKRYL*RLTILI-VTGNS 289718


>gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 genomic scaffold, whole genome
               shotgun sequence
          Length = 1324930

 Score = 24.3 bits (51), Expect = 5.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 21      IVELFVGIWFAIKQLFLTFLA 41
               I+ LFV   F+ KQ+F+ F+A
Sbjct: 1140363 IILLFVNFIFSSKQIFILFIA 1140425


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.328    0.144    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 774,230
Number of Sequences: 84
Number of extensions: 6116
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 10
length of query: 110
length of database: 3,081,750
effective HSP length: 78
effective length of query: 32
effective length of database: 3,075,198
effective search space: 98406336
effective search space used: 98406336
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)