TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) Trypanosoma
cruzi strain CL Brener tcruzi_1047053508727, whole genome shotgun
sequence:[translate(1)]
         (89 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989735.1| Cryptosporidium muris RN66 scf_1106632353989 geno...    24   4.3  
gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 geno...    24   4.3  
gb|DS989736.1| Cryptosporidium muris RN66 scf_1106632373433 geno...    24   5.6  
gb|DS989733.1| Cryptosporidium muris RN66 scf_1106632373425 geno...    24   5.6  
gb|DS989727.1| Cryptosporidium muris RN66 scf_1106632353999 geno...    24   5.6  
gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 geno...    23   7.3  
gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 geno...    23   7.3  

>gb|DS989735.1| Cryptosporidium muris RN66 scf_1106632353989 genomic scaffold, whole
              genome shotgun sequence
          Length = 378465

 Score = 24.3 bits (51), Expect = 4.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 36     VSSEPVSQHVQEYRSTTRIVP 56
              V   P+SQHVQ+  ST + +P
Sbjct: 277780 VGVAPISQHVQQPMSTNKKLP 277718


>gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 genomic scaffold, whole
              genome shotgun sequence
          Length = 772423

 Score = 24.3 bits (51), Expect = 4.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 29     WLFFATLVSSEPVSQHVQEYRSTTRIV 55
              W+F    VS+EP  + + E + + ++V
Sbjct: 332930 WIFLPRRVSNEPYDEFLDEMKGSNKMV 332850


>gb|DS989736.1| Cryptosporidium muris RN66 scf_1106632373433 genomic scaffold, whole
              genome shotgun sequence
          Length = 367275

 Score = 23.9 bits (50), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 3      YVANGRVVDSKPFSLVDFFLSILRLMWLFFA 33
              ++ N  +  S  F +VDFFLS + L +L +A
Sbjct: 354863 FLLNNLLFLSVLFKIVDFFLSNIDLTYLEYA 354771


>gb|DS989733.1| Cryptosporidium muris RN66 scf_1106632373425 genomic scaffold, whole
              genome shotgun sequence
          Length = 528544

 Score = 23.9 bits (50), Expect = 5.6
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -1

Query: 55     VPFGGG-RSVGHAPRGPNIHGLPKGSLTGGC 84
              +PFG    +VG     PN   +  G+  GGC
Sbjct: 526207 IPFGANWYTVGFPVSSPNCQWIETGNYLGGC 526115



 Score = 23.5 bits (49), Expect = 7.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 27     LMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSV 63
              L+  FF  L++     QH  + RS  +++P   GRS+
Sbjct: 293736 LLSFFFIPLLTFFAEKQHTGKLRS*VKLLPI*IGRSI 293846


>gb|DS989727.1| Cryptosporidium muris RN66 scf_1106632353999 genomic scaffold, whole
              genome shotgun sequence
          Length = 1306717

 Score = 23.9 bits (50), Expect = 5.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 31     FFATLVSSEPVSQH 44
              FF +L+S EP++QH
Sbjct: 703510 FFLSLISEEPLAQH 703469


>gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 genomic scaffold, whole
              genome shotgun sequence
          Length = 965821

 Score = 23.5 bits (49), Expect = 7.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 4      VANGRVVDSKPFSLVDFFLSILRLMWLFFATLVSS 38
              + N  V+  K  S+V FFL  +  +W +   LVSS
Sbjct: 172932 ILNYYVIILKYISIVLFFLVNIIYIWKYIDNLVSS 173036



 Score = 23.5 bits (49), Expect = 7.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 3      YVANGRVVDSKPFSLVDFFLSILRLMWLFFATLVS 37
              Y   G+   S  F ++DFFLS + +++++   L S
Sbjct: 810703 YKIQGKNKISLIFIILDFFLSYILIVYIYIYLLFS 810807


>gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 genomic scaffold, whole
              genome shotgun sequence
          Length = 1324930

 Score = 23.5 bits (49), Expect = 7.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 26     RLMWLFFATLVSSEPVS 42
              R++W+F  TL    P+S
Sbjct: 430579 RILWIFLVTLFPKNPIS 430629


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.323    0.141    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 744,216
Number of Sequences: 84
Number of extensions: 7812
Number of successful extensions: 54
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 29
length of query: 89
length of database: 3,081,750
effective HSP length: 64
effective length of query: 25
effective length of database: 3,076,374
effective search space: 76909350
effective search space used: 76909350
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)