TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000053_1.0 # Protein # Selenoprotein K1 (SelK1) #
Anopheles gambiae # Complete
         (96 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989732.1| Cryptosporidium muris RN66 scf_1106632373461 geno...    24   5.6  
gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 geno...    23   7.3  

>gb|DS989732.1| Cryptosporidium muris RN66 scf_1106632373461 genomic scaffold, whole
              genome shotgun sequence
          Length = 567910

 Score = 23.9 bits (50), Expect = 5.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 24     LIMGFFNFLVMFFRTMLDFQ 43
              L + F N L++FFR   DF+
Sbjct: 151752 LCLSFSNSLILFFRNFSDFK 151693


>gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 genomic scaffold, whole
              genome shotgun sequence
          Length = 965821

 Score = 23.5 bits (49), Expect = 7.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 20     RIKGLIMGFFNFLVMFFR 37
              +I   + GFFNFL ++FR
Sbjct: 670189 KILYFLRGFFNFLDLYFR 670242


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.332    0.146    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,471
Number of Sequences: 84
Number of extensions: 2774
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 4
length of query: 96
length of database: 3,081,750
effective HSP length: 71
effective length of query: 25
effective length of database: 3,075,786
effective search space: 76894650
effective search space used: 76894650
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 48 (23.1 bits)