TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989730.1| Cryptosporidium muris RN66 scf_1106632373475 geno...    29   0.26 

>gb|DS989730.1| Cryptosporidium muris RN66 scf_1106632373475 genomic scaffold, whole
             genome shotgun sequence
          Length = 723783

 Score = 28.9 bits (63), Expect = 0.26
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 2     DDRKENKKNADYEIFLRDRKLKYEKIRKRNALHNK 36
             ++RKEN+K  +     R+RK K  + +KRN   N+
Sbjct: 46787 ENRKENRKGKENRSRKRNRKRKENRSKKRNRKENR 46891



 Score = 28.5 bits (62), Expect = 0.34
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 3     DRKENKKNADYEIFLRDRKLKYEKIRKRNALHNK 36
             +RKEN+K  +     R+RK K  + RKRN   N+
Sbjct: 46244 NRKENRKGKENRSRKRNRKGKENRSRKRNRKENR 46345



 Score = 28.1 bits (61), Expect = 0.44
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 2     DDRKENKKNADYEIFLRDRKLKYEKIRKRNALHNK 36
             ++RKEN+K  +     R+RK K  + +KRN   N+
Sbjct: 45947 ENRKENRKGKENRSRKRNRKGKENRSKKRNRKRNR 46051



 Score = 27.3 bits (59), Expect = 0.75
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 3     DRKENKKNADYEIFLRDRKLKYEKIRKRN 31
             +RKEN+K  +     R+RK K  + RKRN
Sbjct: 46376 NRKENRKGKENRSRKRNRKRKENRSRKRN 46462



 Score = 26.9 bits (58), Expect = 0.98
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 4     RKENKKNADYEIFLRDRKLKYEKIRKRNALHNK 36
             RKEN+K  +     R+RK K  + +KRN   N+
Sbjct: 46151 RKENRKGKENRSRKRNRKGKENRSKKRNRKRNR 46249



 Score = 25.8 bits (55), Expect = 2.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 3     DRKENKKNADYEIFLRDRKLKYEKIRKRNALHNK 36
             +RKEN+K  +     R RK K  + RKRN   N+
Sbjct: 45854 NRKENRKGKEN----RSRKRKENRSRKRNKKRNR 45943



 Score = 25.0 bits (53), Expect = 3.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 3     DRKENKKNADYEIFLRDRKLKYEKIRKRN 31
             +RKEN+K  +     R RK K  + RKR+
Sbjct: 47066 NRKENRKGKENRSRKRSRKRKENRSRKRS 47152



 Score = 24.6 bits (52), Expect = 4.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 4     RKENKKNADYEIFLRDRKLKYEKIRKRN 31
             RKEN+K  +     R RK K  + RKR+
Sbjct: 46505 RKENRKGKENRSRKRSRKRKENRSRKRS 46588


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.318    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 755,393
Number of Sequences: 84
Number of extensions: 6884
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 11
length of query: 116
length of database: 3,081,750
effective HSP length: 79
effective length of query: 37
effective length of database: 3,075,114
effective search space: 113779218
effective search space used: 113779218
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)