TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000032_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Homo sapiens # Complete
         (392 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989730.1| Cryptosporidium muris RN66 scf_1106632373475 geno...    30   0.93 

>gb|DS989730.1| Cryptosporidium muris RN66 scf_1106632373475 genomic scaffold, whole
              genome shotgun sequence
          Length = 723783

 Score = 30.0 bits (66), Expect = 0.93
 Identities = 24/93 (25%), Positives = 41/93 (44%)
 Frame = +2

Query: 52     EDEQFLGAVMPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDL 111
              E    +G V P L  G +   IPL   G    +   Y +PI+D    +   A A ++ DL
Sbjct: 562127 EGSSLIGGVGPILEEGWNLLDIPLSISGPDNTKADIYSFPIID----LLTYASAKLIHDL 562294

Query: 112    YAMGVTECDNMLMLLGVSNKMTDRERDKVMPLI 144
              +  G  +   +L++L ++  +    + K  P I
Sbjct: 562295 FTSGNLKSLVILVMLPIAITLE*SSQPKKRPEI 562393


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,139,908
Number of Sequences: 84
Number of extensions: 38980
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 4
length of query: 392
length of database: 3,081,750
effective HSP length: 94
effective length of query: 298
effective length of database: 3,073,854
effective search space: 916008492
effective search space used: 916008492
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)