TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Drosophila melanogaster # Complete
         (370 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989735.1| Cryptosporidium muris RN66 scf_1106632353989 geno...    31   0.39 
gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 geno...    27   7.3  
gb|DS989734.1| Cryptosporidium muris RN66 scf_1106632354001 geno...    27   9.5  
gb|DS989740.1| Cryptosporidium muris RN66 scf_1106632353993 geno...    27   9.5  

>gb|DS989735.1| Cryptosporidium muris RN66 scf_1106632353989 genomic scaffold, whole
              genome shotgun sequence
          Length = 378465

 Score = 31.2 bits (69), Expect = 0.39
 Identities = 33/153 (21%), Positives = 58/153 (37%)
 Frame = -3

Query: 183    AQPGDVLVLTKPLGGQMAMDAHLWQLNQTEKYKKLLSECSDADIKETFEIAVKSMTYLNK 242
              A+ GDV  LT+ LG + A  A +W+ N +  Y      C++ ++K   E+ VKS    ++
Sbjct: 265900 ARRGDVKKLTQVLGNEKAAQAVIWKKNTSSAY------CNE-NMKSNGEMQVKSQKSDHE 265742

Query: 243    NAALLMHKYQAHCATDITGFGLLGHANNLAQFQKEKVLFQINKLPIIKNVLKFSTLVGQS 302
               A  L        A +   F   G      +     +  Q+ +    K+ L   +LV   
Sbjct: 265741 GAFTL-----KTIANNFMSFFGYGSEQESGKSNPSDIKIQVRRQQQKKSTLTSRSLVS-- 265583

Query: 303    TKFRSGRSVETSGGLLICLPADAADKFCRDFEE 335
                              + +  D  D  C+D+ +
Sbjct: 265582 ----------------VAVATDVEDNGCKDYRD 265532


>gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 genomic scaffold, whole
              genome shotgun sequence
          Length = 772423

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 18     FTTHTGUSCKIPQKVLEKYLRGTEIENKNNDGYLI 52
              F   T    KIP K+++KY++  E    N D YLI
Sbjct: 718645 FINSTHGESKIPSKIIQKYIKIGE----NEDKYLI 718553


>gb|DS989734.1| Cryptosporidium muris RN66 scf_1106632354001 genomic scaffold, whole
              genome shotgun sequence
          Length = 406819

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = +3

Query: 99     DVYAVGVTQFDTVEMIVSTSTSFSEKERDVVIGLVMKG------FQNSLKANGYRNTPLI 152
              +VY    TQ  + E I  +++ +S K +DV++G +M+           +K    ++  +I
Sbjct: 324732 EVYKNVNTQNKSSEQIEISTSKYSRKSQDVILGYLMQSSLIEDYIYEMVKTTIQKHRSII 324911

Query: 153    IRQLKINP 160
              +  + I P
Sbjct: 324912 VEGVHITP 324935


>gb|DS989740.1| Cryptosporidium muris RN66 scf_1106632353993 genomic scaffold, whole
              genome shotgun sequence
          Length = 196818

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -1

Query: 338    NGEQKSFQIGHVTAANESDAVLCEDVEFIEVSL 370
              N + +S    ++ A NES  ++C+D+ F+ +++
Sbjct: 159789 NSDLRSIATSNLVALNESKEIICKDLIFMIINI 159691


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,284,368
Number of Sequences: 84
Number of extensions: 45827
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 22
length of query: 370
length of database: 3,081,750
effective HSP length: 93
effective length of query: 277
effective length of database: 3,073,938
effective search space: 851480826
effective search space used: 851480826
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)