TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Anopheles gambiae # Complete
         (369 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989730.1| Cryptosporidium muris RN66 scf_1106632373475 geno...    28   2.5  
gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 geno...    27   7.3  
gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 geno...    27   9.5  

>gb|DS989730.1| Cryptosporidium muris RN66 scf_1106632373475 genomic scaffold, whole
              genome shotgun sequence
          Length = 723783

 Score = 28.5 bits (62), Expect = 2.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 126    FTEQEREVVVPMVMQGFL-EAAKACNAPVQIGSIAENPWC 164
              +  +ER  + P  + G L  A++ C    QIG IA NP C
Sbjct: 158386 YKREERRQLNPTGIPGVLGRASRTCRRCGQIGHIASNPMC 158505


>gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 genomic scaffold, whole
              genome shotgun sequence
          Length = 965821

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 217    WAQLRERFTVADIEQTYRIALESMSRLNKTGAELMKKYG 255
              W++L E  T A++ + Y + L  MS +         K+G
Sbjct: 814272 WSKLNEMMTCAELTREYPVTLPDMSEIYNLTNNFSPKWG 814388


>gb|DS989729.1| Cryptosporidium muris RN66 scf_1106632373431 genomic scaffold, whole
              genome shotgun sequence
          Length = 772423

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +3

Query: 29     PQDVLNRLLAGVYGEQLGDKDGKGPNKEEGVGIGLDSSVIALKHDLFLVQSVDFFYPLID 88
              PQD+  R + G+Y + + DK  +G N      + LD  V    HDL   Q+      ++D
Sbjct: 407955 PQDLRYRGIGGLYWDSISDKRIRGVNTR----LKLDVKV----HDLISFQNTKICRKVVD 408110


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,748,932
Number of Sequences: 84
Number of extensions: 29417
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 8
length of query: 369
length of database: 3,081,750
effective HSP length: 93
effective length of query: 276
effective length of database: 3,073,938
effective search space: 848406888
effective search space used: 848406888
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)