TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo
sapiens # Complete
         (94 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, comp...    27   1.5  
dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, comp...    25   5.9  
dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, comp...    25   5.9  
dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp...    25   5.9  
dbj|AP006489.2| Cyanidioschyzon merolae DNA, chromosome 7, compl...    24   7.7  

>dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, complete genome, complete
               sequence
          Length = 1282939

 Score = 26.6 bits (57), Expect = 1.5
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +1

Query: 45      DVKKRRSYGNSSDSR 59
               DV++RR++GNS DSR
Sbjct: 1182451 DVRRRRAHGNSRDSR 1182495


>dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, complete genome, complete
              sequence
          Length = 859119

 Score = 24.6 bits (52), Expect = 5.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 45     DVKKRRSYGNSSDSR 59
              DV++RR +GN  DSR
Sbjct: 376918 DVRRRREHGNGRDSR 376874


>dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, complete genome, complete
              sequence
          Length = 852727

 Score = 24.6 bits (52), Expect = 5.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 45     DVKKRRSYGNSSDSR 59
              DV++RR +GN  DSR
Sbjct: 772691 DVRRRREHGNGRDSR 772735


>dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete
             sequence
          Length = 1621617

 Score = 24.6 bits (52), Expect = 5.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 43    QQDVKKRRSYGNSSDSR 59
             ++DV++R ++GN  DSR
Sbjct: 32375 EEDVRRREAHGNGRDSR 32425


>dbj|AP006489.2| Cyanidioschyzon merolae DNA, chromosome 7, complete genome, complete
              sequence
          Length = 584452

 Score = 24.3 bits (51), Expect = 7.7
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 12     SRSQSPWRLSLITD 25
              S S SPWR SLI+D
Sbjct: 136541 SMSSSPWRRSLISD 136500


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.325    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,167,923
Number of Sequences: 20
Number of extensions: 10027
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 16
length of query: 94
length of database: 5,515,582
effective HSP length: 69
effective length of query: 25
effective length of database: 5,514,202
effective search space: 137855050
effective search space used: 137855050
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)