TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000044_1.0 # Protein # Selenoprotein K1 (SelK1) #
Drosophila melanogaster # Complete
         (110 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006484.2| Cyanidioschyzon merolae DNA, chromosome 2, compl...    27   1.4  
dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, comp...    27   1.8  
dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp...    27   1.8  
dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, comp...    26   3.1  
dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, comp...    25   5.2  
dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp...    25   5.2  
dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, comp...    25   6.8  
dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, comp...    24   8.9  

>dbj|AP006484.2| Cyanidioschyzon merolae DNA, chromosome 2, complete genome, complete
              sequence
          Length = 457013

 Score = 26.9 bits (58), Expect = 1.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 88     PNRRIGRIQPTMSCNMPAGGGUG 110
              PN  +G +QP  S  MP+G G G
Sbjct: 311677 PNANMGPMQPATSTGMPSGLGFG 311609


>dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, complete genome, complete
              sequence
          Length = 852727

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 26     VGIWFAIKQLFLTFLAPFTG 45
              VG+WFA+   F  FL P  G
Sbjct: 240513 VGLWFAVDYAFRVFLLPHRG 240454



 Score = 24.6 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 87     RPNRRIGRIQPTMSCNMPAGGGUG 110
              R N RIG      +C MPA G  G
Sbjct: 478212 RENSRIGFAPAAENCGMPAAGDRG 478141


>dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete
              sequence
          Length = 1253087

 Score = 26.6 bits (57), Expect = 1.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 87     RPNRRIGRIQPTMSCNMPAGG 107
              +PNR    + P+ SC +PAGG
Sbjct: 402288 QPNRYFSPVDPSGSCCVPAGG 402226


>dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, complete genome, complete
              sequence
          Length = 839707

 Score = 25.8 bits (55), Expect = 3.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 3      YIDHNGRVWEKRPWDWRRI 21
              + DH+G  WE+RP   RRI
Sbjct: 650526 FYDHSGDHWERRPHH*RRI 650582


>dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, complete genome, complete
              sequence
          Length = 902900

 Score = 25.0 bits (53), Expect = 5.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 1      MVYIDHNGRVWEKRPWD 17
              +V IDH   +WE+ PW+
Sbjct: 627522 IVCIDHMLAIWERAPWN 627472


>dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete
              sequence
          Length = 908485

 Score = 25.0 bits (53), Expect = 5.2
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +2

Query: 9      RVWEKRPW---DWRRIVELFVGIWFAIKQLFLTFLAPF 43
              R  E R W    WR +V L + +WFA++   +    PF
Sbjct: 616445 RALEHRHWLRSHWRVLVALCLLLWFAVRIYLVLPSIPF 616558


>dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, complete genome, complete
              sequence
          Length = 852849

 Score = 24.6 bits (52), Expect = 6.8
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -3

Query: 9      RVWEK-RPWDWRRIVELFVGIWFAIKQ 34
              R++E+  P+ ++ IVEL V +WF  KQ
Sbjct: 539998 RLYERLTPYRYQVIVELGVNLWFRWKQ 539918


>dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, complete genome, complete
              sequence
          Length = 1282939

 Score = 24.3 bits (51), Expect = 8.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 8      GRVWEKRPWDWRR 20
              G+VW +RP +W R
Sbjct: 878484 GKVWHRRPCEWPR 878446


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.328    0.144    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,906,997
Number of Sequences: 20
Number of extensions: 17016
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 55
length of query: 110
length of database: 5,515,582
effective HSP length: 81
effective length of query: 29
effective length of database: 5,513,962
effective search space: 159904898
effective search space used: 159904898
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)