TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|70870239|gb|AAHK01001632.1|:subseq(1423,2260) Trypanosoma cruzi strain CL Brener tcruzi_1047053508727, whole genome shotgun sequence:[translate(1)] (89 letters) Database: C.merolae/genome.fa 20 sequences; 16,546,747 total letters Searching....................done Score E Sequences producing significant alignments: (bits) Value dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, comp... 27 1.5 dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, comp... 26 2.6 dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp... 26 2.6 dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, compl... 25 3.4 dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, comp... 25 3.4 dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, comp... 25 4.5 dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp... 25 4.5 dbj|AP006483.2| Cyanidioschyzon merolae DNA, chromosome 1, compl... 25 5.9 dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, compl... 25 5.9 dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, compl... 24 7.7 >dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, complete genome, complete sequence Length = 1282939 Score = 26.6 bits (57), Expect = 1.5 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = +1 Query: 44 HVQEYRSTTRIVPFGGGRSVGHAPRGPN 71 H +EYR+ FGG + +G+APR P+ Sbjct: 1009771 HCREYRA------FGGTQGIGNAPRCPD 1009836 Score = 25.8 bits (55), Expect = 2.6 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = +1 Query: 33 ATLVSSEPVSQHVQ-EYRSTTRIVPFGGGRSVGHAPRGPNIHGLPKGSL 80 AT + EPV+ +Q R + PFG R++ H P + LP G L Sbjct: 233368 ATGFNREPVALPLQLSKRDSRHRTPFGRHRALLHGPLVERLRLLPLGQL 233514 Score = 25.8 bits (55), Expect = 2.6 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 5/39 (12%) Frame = -3 Query: 36 VSSEPVS-----QHVQEYRSTTRIVPFGGGRSVGHAPRG 69 ++S P+S V + R+ + P GGG GH+ G Sbjct: 137924 INSAPISLLATESQVHQVRAAPTVQPSGGGNQPGHSTSG 137808 >dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, complete genome, complete sequence Length = 866983 Score = 25.8 bits (55), Expect = 2.6 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 5/39 (12%) Frame = +2 Query: 36 VSSEPVS-----QHVQEYRSTTRIVPFGGGRSVGHAPRG 69 ++S P+S V + R+ + P GGG GH+ G Sbjct: 789935 INSAPISLLATESQVHQVRAAPTVQPSGGGNQPGHSTSG 790051 >dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete sequence Length = 1253087 Score = 25.8 bits (55), Expect = 2.6 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +3 Query: 21 FLSILRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRS 62 F+ + R WL F T +EP V R+ +R++P RS Sbjct: 740508 FIVVRR*GWLCFRTQCPAEPHRLDVSPARAASRVLPVQRVRS 740633 Score = 24.6 bits (52), Expect = 5.9 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -2 Query: 24 ILRLMWLFFATLVSSEPVSQHVQEYRST 51 +LRL L TL SEP+ QH++ ++ T Sbjct: 417553 VLRLSILHPVTLSRSEPLGQHLRFHQIT 417470 >dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, complete genome, complete sequence Length = 739753 Score = 25.4 bits (54), Expect = 3.4 Identities = 13/51 (25%), Positives = 21/51 (41%) Frame = -3 Query: 35 LVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIHGLPKGSLTGGCA 85 +++S + + + R P GGR H P G+P G GC+ Sbjct: 152063 MIASRTATGAPDDAATNVRDAPLHGGRGTPHYP------GVPTGDAAPGCS 151929 >dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, complete genome, complete sequence Length = 859119 Score = 25.4 bits (54), Expect = 3.4 Identities = 23/62 (37%), Positives = 24/62 (38%), Gaps = 9/62 (14%) Frame = -2 Query: 21 FLSILRLMWLFFATLVSSEPVSQ-------HVQEYRSTTRIVPFG--GGRSVGHAPRGPN 71 FLS LRL F A SS P S +E RI G RS G AP P Sbjct: 699314 FLSALRLRVAFVAGNASSRPASTAHYVLELDAKEGNGLVRITDVGAQAARSSGAAPVAPL 699135 Query: 72 IH 73 H Sbjct: 699134 PH 699129 Score = 24.3 bits (51), Expect = 7.7 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 4/79 (5%) Frame = +2 Query: 5 ANGRVVDSKPFSLVDFFLSILRLMWLFFATLVSS---EPVSQHVQEYRST-TRIVPFGGG 60 A RV D K V ++ R F+ +SS E + + RS + V F Sbjct: 607142 ARHRVHDQKSRDAVSAVITTTRGKRYFYRVPLSSVCYENETGATESLRSI*LKYVEFHDE 607321 Query: 61 RSVGHAPRGPNIHGLPKGS 79 GHA +HGLP G+ Sbjct: 607322 CRAGHAHLAKALHGLPAGA 607378 >dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, complete genome, complete sequence Length = 839707 Score = 25.0 bits (53), Expect = 4.5 Identities = 14/55 (25%), Positives = 24/55 (43%) Frame = +1 Query: 25 LRLMWLFFATLVSSEPVSQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIHGLPKGS 79 LR M L F +P++ + + T +VP GGG + P++ G+ Sbjct: 326863 LRSMPLAFEAKPGGKPLAPEAAAFIA*TLVVPGGGGMIPAAGTKDPDVRAPATGT 327027 Score = 24.3 bits (51), Expect = 7.7 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 3/22 (13%) Frame = -2 Query: 64 GHAPRGPNIHGL---PKGSLTG 82 G +GPN+HGL P GS+ G Sbjct: 574218 GPTKQGPNLHGLFGRPAGSVPG 574153 >dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete sequence Length = 908485 Score = 25.0 bits (53), Expect = 4.5 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = +1 Query: 73 HGLPKGSLTGGC 84 HG+PKG GGC Sbjct: 540199 HGIPKGQSVGGC 540234 >dbj|AP006483.2| Cyanidioschyzon merolae DNA, chromosome 1, complete genome, complete sequence Length = 422616 Score = 24.6 bits (52), Expect = 5.9 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 7/45 (15%) Frame = -3 Query: 2 PYVANGRVVDSKPFSLVDF-------FLSILRLMWLFFATLVSSE 39 PYVA R DSK S+++ FL++ ++W ++ E Sbjct: 317770 PYVAIRRCCDSKQLSVIETILPSMTQFLAVTLIIWCGYSVFAFGE 317636 >dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, complete genome, complete sequence Length = 810151 Score = 24.6 bits (52), Expect = 5.9 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -1 Query: 51 TTRIVPFGGGRSVGHAPRGPNIHGLPKGS 79 TT +P G G+ V PN+ LP GS Sbjct: 197011 TTLNLPSGAGKPVPPPTPTPNLTALPNGS 196925 >dbj|AP006486.2| Cyanidioschyzon merolae DNA, chromosome 4, complete genome, complete sequence Length = 513455 Score = 24.3 bits (51), Expect = 7.7 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = +1 Query: 42 SQHVQEYRSTTRIVPFGGGRSVGHAPRGPNIH 73 SQ EYR +++ F GG ++ H P +H Sbjct: 443188 SQFCIEYRRSSKRDVFRGGHALAHFPSALPLH 443283 Database: C.merolae/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 16,546,747 Number of sequences in database: 20 Lambda K H 0.323 0.141 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,953,980 Number of Sequences: 20 Number of extensions: 27457 Number of successful extensions: 173 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 142 Number of HSP's gapped (non-prelim): 106 length of query: 89 length of database: 5,515,582 effective HSP length: 64 effective length of query: 25 effective length of database: 5,514,302 effective search space: 137857550 effective search space used: 137857550 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 50 (23.9 bits)