TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000053_1.0 # Protein # Selenoprotein K1 (SelK1) #
Anopheles gambiae # Complete
         (96 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, compl...    25   5.9  

>dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, complete genome, complete
              sequence
          Length = 810151

 Score = 24.6 bits (52), Expect = 5.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 4      ISRNGAVQEAQPWGVDR 20
              + RNG ++   PWG +R
Sbjct: 484611 VGRNGIIEHHMPWGYER 484661


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.332    0.146    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 822,871
Number of Sequences: 20
Number of extensions: 2753
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 1
length of query: 96
length of database: 5,515,582
effective HSP length: 71
effective length of query: 25
effective length of database: 5,514,162
effective search space: 137854050
effective search space used: 137854050
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.9 bits)