TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000032_1.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Homo sapiens # Complete (392 letters) Database: C.merolae/genome.fa 20 sequences; 16,546,747 total letters Searching....................done Score E Sequences producing significant alignments: (bits) Value dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp... 175 3e-44 dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, compl... 28 4.8 dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, comp... 28 6.2 dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, comp... 28 6.2 dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, comp... 28 6.2 >dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete sequence Length = 908485 Score = 175 bits (443), Expect = 3e-44 Identities = 123/319 (38%), Positives = 166/319 (52%), Gaps = 38/319 (11%) Frame = -2 Query: 18 FRLTRFTELKGTGCKVPQDVL-------QKLLESLQENHFQE---------DEQFLGAVM 61 FRLTR++ LKG GCKVPQ L + LL S ++ + + G V Sbjct: 479109 FRLTRYSTLKGCGCKVPQSELLEWMTATKNLLRSPMKSFSRPGGLMSTSNTESSTPGDVS 478930 Query: 62 PRLGIGMDTCVIPLRHGG--------------------LSLVQTTDYIYPIVDDPYMMGR 101 LG+GMD V+ L L L+ TTD+ +P+V+DPY+MGR Sbjct: 478929 VELGVGMDASVVRLTQLSSRQQSTEKDAENAPSFGTQPLYLISTTDFFFPLVEDPYLMGR 478750 Query: 102 IACANVLSDLYAMGV-TECDNMLMLLGVSNKMTDRE-RDKVMPLIIQGFKDAAEEAGTSV 159 IA ANVLSD YA+G+ T MLML+ + ++ R V ++ GF DA EAGT V Sbjct: 478749 IAAANVLSDAYALGIRTPPSTMLMLVCAATEIEPPALRAGVTQTMMAGFIDACHEAGTQV 478570 Query: 160 TGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPE 219 TGGQT LNPW ++GGVA V EF+MPD A PGD +VLTKPLGTQVA+ ++QWL E Sbjct: 478569 TGGQTTLNPWPLIGGVAEVVLPRGEFLMPDAAQPGDTIVLTKPLGTQVAINLYQWLGQME 478390 Query: 220 KWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLA 279 + + L+ + E + QE R + + + H A DI G G H + A Sbjct: 478389 DAHYLHLLESLETTQ--QQEYGPEDTRRSVHGQFVPPSEETH-ARDIPGPG-PAHTTHDA 478222 Query: 280 KQQRNEVSFVIHNLPVLAK 298 + R S ++ LP A+ Sbjct: 478221 RLSRALSSSILEQLPPAAR 478165 Score = 116 bits (291), Expect = 1e-26 Identities = 72/166 (43%), Positives = 98/166 (59%), Gaps = 11/166 (6%) Frame = -2 Query: 221 WNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGLM-HTFNAHAATDITGFGILGHAQNLA 279 ++KI+ V+T D+ AY A ++MA LN AA L+ + AHA TDITGFGILGHAQNLA Sbjct: 478128 YSKIEQVLTPADICRAYDVACLSMAHLNARAAQLLLESGAAHAVTDITGFGILGHAQNLA 477949 Query: 280 KQQRNEVSFVIHNLPVLAKMAAVSKAC--GNMFGLMHGTCPETSGGLLICLPREQ----- 332 + Q+ V I LP++ M + +A G MF L+ G ETSGGLLIC Sbjct: 477948 RNQKAPVDMEIDVLPIIRGMTSADRALQGGKMFRLLEGFSAETSGGLLICFGASSTERSS 477769 Query: 333 ---AARFCAEIKSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEV 375 A +FC ++ + + AWI+G V G+R ARI+D +I+EV Sbjct: 477768 QVVARQFCEKLAT--VDDHWPAWIVGRVVPGSREARILDHVKILEV 477637 >dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, complete genome, complete sequence Length = 536163 Score = 28.5 bits (62), Expect = 4.8 Identities = 23/80 (28%), Positives = 37/80 (46%) Frame = +3 Query: 97 YMMGRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAG 156 ++ G ACA S L +G+ + D+ L + D E +V+ LII F ++ G Sbjct: 459468 HLCGTSACAT*-SSLAELGLNDNDSSLFI-----SCCDLEEWRVLDLIICCFSIFSDYLG 459629 Query: 157 TSVTGGQTVLNPWIVLGGVA 176 V +V W+V+G A Sbjct: 459630 IGVLLKSSVSRGWLVIGAHA 459689 >dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, complete genome, complete sequence Length = 852849 Score = 28.1 bits (61), Expect = 6.2 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%) Frame = +3 Query: 266 ITGFGILGHAQNLAKQQRNEVSFVIHN-LPVLAKMAAVSKACGNMFGLMHGTCPETSGGL 324 I G I HA + + ++ V + PV+ + A+ K+C F +HG P + Sbjct: 413550 IAGSMICTHASENSLTRLRDMQVVASSPAPVVESIRAIQKSCVGKFRALHGLQPVDVALV 413729 Query: 325 L--ICLPREQA 333 + +C PR+ A Sbjct: 413730 IAALCWPRKAA 413762 >dbj|AP006496.2| Cyanidioschyzon merolae DNA, chromosome 14, complete genome, complete sequence Length = 852727 Score = 28.1 bits (61), Expect = 6.2 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = -2 Query: 274 HAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGT 316 HAQ + + + F+ + A+ A + AC +FG +H T Sbjct: 276459 HAQTVVAIDASLLIFIFFAFRLSARFTAATPACSQLFGYVHRT 276331 >dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, complete genome, complete sequence Length = 1282939 Score = 28.1 bits (61), Expect = 6.2 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +1 Query: 73 IPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNML 123 +P+R GG T +P++D Y + R+ ANV S YA+ D L Sbjct: 66886 VPVRRGGARKA-TYKKTFPVLDAVYALRRLRFANVGS*SYALPNKSADTKL 67035 Database: C.merolae/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 16,546,747 Number of sequences in database: 20 Lambda K H 0.320 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,668,059 Number of Sequences: 20 Number of extensions: 118806 Number of successful extensions: 557 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 522 Number of HSP's gapped (non-prelim): 98 length of query: 392 length of database: 5,515,582 effective HSP length: 98 effective length of query: 294 effective length of database: 5,513,622 effective search space: 1621004868 effective search space used: 1621004868 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (27.3 bits)