TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000048_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Drosophila melanogaster # Complete
         (370 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp...   119   1e-27
dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, comp...    29   3.4  
dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, compl...    28   5.8  
dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, comp...    27   9.9  
dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, comp...    27   9.9  

>dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete
              sequence
          Length = 908485

 Score =  119 bits (299), Expect = 1e-27
 Identities = 86/244 (35%), Positives = 125/244 (51%), Gaps = 44/244 (18%)
 Frame = -2

Query: 13     FQLTKFTTHTGUSCKIPQKVLEKYLRGTE------IENKNNDGYL--------------- 51
              F+LT+++T  G  CK+PQ  L +++  T+      +++ +  G L               
Sbjct: 479109 FRLTRYSTLKGCGCKVPQSELLEWMTATKNLLRSPMKSFSRPGGLMSTSNTESSTPGDVS 478930

Query: 52     --IGSGMDCAVIPLKR--------HKD-----------YLLIQTVDFFYPMVNDPELLGR 90
                +G GMD +V+ L +         KD             LI T DFF+P+V DP L+GR
Sbjct: 478929 VELGVGMDASVVRLTQLSSRQQSTEKDAENAPSFGTQPLYLISTTDFFFPLVEDPYLMGR 478750

Query: 91     IALANVLSDVYAVGV-TQFDTVEMIVSTSTSFSEKE-RDVVIGLVMKGFQNSLKANGYRN 148
              IA ANVLSD YA+G+ T   T+ M+V  +T       R  V   +M GF ++    G   
Sbjct: 478749 IAAANVLSDAYALGIRTPPSTMLMLVCAATEIEPPALRAGVTQTMMAGFIDACHEAG--- 478579

Query: 149    TPLIIRQLKINPWCIIGGIATSVCRSEEIILPSNAQPGDVLVLTKPLGGQMAMDAHLWQL 208
              T +   Q  +NPW +IGG+A  V    E ++P  AQPGD +VLTKPLG Q+A++ + W L
Sbjct: 478578 TQVTGGQTTLNPWPLIGGVAEVVLPRGEFLMPDAAQPGDTIVLTKPLGTQVAINLYQW-L 478402

Query: 209    NQTE 212
               Q E
Sbjct: 478401 GQME 478390



 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 52/118 (44%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
 Frame = -2

Query: 214    YKKLLSECSDADIKETFEIAVKSMTYLNKNAA-LLMHKYQAHCATDITGFGLLGHANNLA 272
              Y K+    + ADI   +++A  SM +LN  AA LL+    AH  TDITGFG+LGHA NLA
Sbjct: 478128 YSKIEQVLTPADICRAYDVACLSMAHLNARAAQLLLESGAAHAVTDITGFGILGHAQNLA 477949

Query: 273    QFQKEKVLFQINKLPIIKNVLKFSTLVGQSTKFR--SGRSVETSGGLLICLPADAADK 328
              + QK  V  +I+ LPII+ +      +     FR   G S ETSGGLLIC  A + ++
Sbjct: 477948 RNQKAPVDMEIDVLPIIRGMTSADRALQGGKMFRLLEGFSAETSGGLLICFGASSTER 477775


>dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, complete genome, complete
              sequence
          Length = 1232258

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = -2

Query: 294    KFSTLVGQSTKFRSGRSVETSGGLLICLPADAADKFCRDF 333
              + ++L   + + R+  +++  GGL++C   +A  K C DF
Sbjct: 191944 QLASLPTAAARQRAQHAIQRQGGLVVCDDLEACAKLCSDF 191825


>dbj|AP006488.2| Cyanidioschyzon merolae DNA, chromosome 6, complete genome, complete
              sequence
          Length = 536163

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -3

Query: 175    EEIILPSNAQPGDVLVLTKPLGGQMAMDAHLWQLNQTEKYKKLLS 219
              EE  +P+N+Q G VL  T   G + A+    +++   E + KLLS
Sbjct: 355474 EESDVPNNSQNGHVLNHTTSGGRERALPGSRFEIFVIESFSKLLS 355340


>dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, complete genome, complete
             sequence
          Length = 839707

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = -3

Query: 293   LKFSTLVGQSTKFRSGRSVETSGGLLICLPADAADKFCRDFEEATN 338
             L+ + L+  S + RSGR+      LLIC    A DK  R   EA N
Sbjct: 84884 LQQNKLLTTSQRLRSGRTQACEHSLLICSQVLAHDKESRCENEAHN 84747


>dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, complete genome, complete
              sequence
          Length = 1282939

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 158    INPWCIIGGIATSVCRSEEIILP 180
              + PW +  GI TSVC +   +LP
Sbjct: 791905 LEPWSLASGIDTSVCGNAVCVLP 791837



 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 158    INPWCIIGGIATSVCRSEEIILP 180
              + PW +  GI TSVC +   +LP
Sbjct: 786759 LEPWSLASGIDTSVCGNAVCVLP 786827


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.319    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,212,254
Number of Sequences: 20
Number of extensions: 82894
Number of successful extensions: 393
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 348
Number of HSP's gapped (non-prelim): 96
length of query: 370
length of database: 5,515,582
effective HSP length: 97
effective length of query: 273
effective length of database: 5,513,642
effective search space: 1505224266
effective search space used: 1505224266
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)