TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000047_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Drosophila melanogaster # Complete
         (398 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp...   173   1e-43
dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, compl...    28   4.9  
dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp...    28   4.9  
dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, comp...    28   8.3  

>dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete
              sequence
          Length = 908485

 Score =  173 bits (438), Expect = 1e-43
 Identities = 107/272 (39%), Positives = 149/272 (54%), Gaps = 49/272 (18%)
 Frame = -2

Query: 38     FRLTRFADLKGRGCKVPQDVLSKLVSA-----------------LQQDYSAQDQEPQFLN 80
              FRLTR++ LKG GCKVPQ  L + ++A                 L    + +   P  ++
Sbjct: 479109 FRLTRYSTLKGCGCKVPQSELLEWMTATKNLLRSPMKSFSRPGGLMSTSNTESSTPGDVS 478930

Query: 81     VAIPRIGIGLDCSVIPLRHGG--------------------LCLVQTTDFFYPIVDDPYM 120
              V    +G+G+D SV+ L                        L L+ TTDFF+P+V+DPY+
Sbjct: 478929 V---ELGVGMDASVVRLTQLSSRQQSTEKDAENAPSFGTQPLYLISTTDFFFPLVEDPYL 478759

Query: 121    MGKIACANVLSDLYAMGV-TDCDNMLMLLAVSTKMTEKE-RDVVIPLIMRGFKDSALEAG 178
              MG+IA ANVLSD YA+G+ T    MLML+  +T++     R  V   +M GF D+  EAG
Sbjct: 478758 MGRIAAANVLSDAYALGIRTPPSTMLMLVCAATEIEPPALRAGVTQTMMAGFIDACHEAG 478579

Query: 179    TTVTGGQSVVNPWCTIGGVASTICQPNEYIVPDNAVVGDVLVLTKPLGTQVAVNAHQWID 238
              T VTGGQ+ +NPW  IGGVA  +    E+++PD A  GD +VLTKPLGTQVA+N +QW+ 
Sbjct: 478578 TQVTGGQTTLNPWPLIGGVAEVVLPRGEFLMPDAAQPGDTIVLTKPLGTQVAINLYQWLG 478399

Query: 239    QPERWNRIKLVVS----------EEDVRKAYH 260
              Q E  + + L+ S           ED R++ H
Sbjct: 478398 QMEDAHYLHLLESLETTQQQEYGPEDTRRSVH 478303



 Score =  116 bits (290), Expect = 2e-26
 Identities = 70/164 (42%), Positives = 100/164 (60%), Gaps = 12/164 (7%)
 Frame = -2

Query: 243    WNRIKLVVSEEDVRKAYHRAMNSMARLNRVAARLMHKYNA-HGATDITGFGLLGHAQTLA 301
              +++I+ V++  D+ +AY  A  SMA LN  AA+L+ +  A H  TDITGFG+LGHAQ LA
Sbjct: 478128 YSKIEQVLTPADICRAYDVACLSMAHLNARAAQLLLESGAAHAVTDITGFGILGHAQNLA 477949

Query: 302    AHQKKDVSFVIHNLPVIAKMAAVAKAC--GNMFQLLQGHSAETSGGLLICLPREQ----- 354
               +QK  V   I  LP+I  M +  +A   G MF+LL+G SAETSGGLLIC          
Sbjct: 477948 RNQKAPVDMEIDVLPIIRGMTSADRALQGGKMFRLLEGFSAETSGGLLICFGASSTERSS 477769

Query: 355    ---AAAYCKDIEK-QEGYQAWIIGIVEKGNKTARIIDKPRVIEV 394
                 A  +C+ +    + + AWI+G V  G++ ARI+D  +++EV
Sbjct: 477768 QVVARQFCEKLATVDDHWPAWIVGRVVPGSREARILDHVKILEV 477637


>dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, complete genome, complete
              sequence
          Length = 481791

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +3

Query: 296    HAQTLAAHQKKDVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQA 355
              HA++   H +    FV H+      ++A      N  Q  QG S+  S      LPR Q 
Sbjct: 425823 HAESSTKHHETSYEFVAHDY*---NLSAGLPHLQNFQQKSQGMSSANSAQFNFHLPRAQC 425993

Query: 356    AAYC 359
                YC
Sbjct: 425994 FVYC 426005


>dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete
              sequence
          Length = 1621617

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = +1

Query: 244    NRIKLVVSEEDVRKAYHRAMNSM------ARLNRVAARLMHKYNAHGATDITGFGLLGHA 297
              +R+KLV S  +    +H  + +        R+ R A R  HK    GAT  TG  ++   
Sbjct: 300607 DRLKLVFS*TEPNSEHHGGLRTR*LAWHECRVRRAAQRQQHKPRRSGATLATGL-VIQRT 300783

Query: 298    QTLAAHQKK 306
              Q L  H+ +
Sbjct: 300784 QRLPEHRTR 300810


>dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, complete genome, complete
              sequence
          Length = 859119

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 129    VLSDLYAMGVTDCDNMLMLLAVSTKMTEKERDVVIPLIM 167
              +L+ +  +G+  CD  L +   STK+    R   +P I+
Sbjct: 715122 ILASVICLGICGCDMSLSMTMPSTKIVSSRRPPTLPSIL 715006


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,813,189
Number of Sequences: 20
Number of extensions: 119130
Number of successful extensions: 596
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 125
length of query: 398
length of database: 5,515,582
effective HSP length: 98
effective length of query: 300
effective length of database: 5,513,622
effective search space: 1654086600
effective search space used: 1654086600
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)