TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000056_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Anopheles gambiae # Complete
         (369 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp...   142   2e-34
dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, comp...    29   2.6  
dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, compl...    29   3.4  
dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, compl...    28   7.5  
dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp...    28   7.5  

>dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete
              sequence
          Length = 908485

 Score =  142 bits (359), Expect = 2e-34
 Identities = 88/250 (35%), Positives = 126/250 (50%), Gaps = 40/250 (16%)
 Frame = -2

Query: 13     FRLTKFSTLRGUGSKVPQDVLNRLLA-----------------GVYGEQLGDKDGKGPNK 55
              FRLT++STL+G G KVPQ  L   +                  G+      +    G   
Sbjct: 479109 FRLTRYSTLKGCGCKVPQSELLEWMTATKNLLRSPMKSFSRPGGLMSTSNTESSTPGDVS 478930

Query: 56     EEGVGIGLDSSVIALKH---------------------DLFLVQSVDFFYPLIDDPFMLG 94
               E +G+G+D+SV+ L                        L+L+ + DFF+PL++DP+++G
Sbjct: 478929 VE-LGVGMDASVVRLTQLSSRQQSTEKDAENAPSFGTQPLYLISTTDFFFPLVEDPYLMG 478753

Query: 95     KIALANVVSDVFAVGA-TEIDQIKLIVTAPTEFTEQE-REVVVPMVMQGFLEAAKACNAP 152
              +IA ANV+SD +A+G  T    + ++V A TE      R  V   +M GF++A       
Sbjct: 478752 RIAAANVLSDAYALGIRTPPSTMLMLVCAATEIEPPALRAGVTQTMMAGFIDACHEAGTQ 478573

Query: 153    VQIGSIAENPWCVIGGAASAVCHRSELIMPYNAQPGDALVLTKPLGTQLATNAYIWMGEQ 212
              V  G    NPW +IGG A  V  R E +MP  AQPGD +VLTKPLGTQ+A N Y W+G+ 
Sbjct: 478572 VTGGQTTLNPWPLIGGVAEVVLPRGEFLMPDAAQPGDTIVLTKPLGTQVAINLYQWLGQM 478393

Query: 213    QSDSWAQLRE 222
              +   +  L E
Sbjct: 478392 EDAHYLHLLE 478363



 Score =  112 bits (281), Expect = 2e-25
 Identities = 69/171 (40%), Positives = 97/171 (56%), Gaps = 12/171 (7%)
 Frame = -2

Query: 210    GEQQSDSWAQLRERFTVADIEQTYRIALESMSRLNKTGAELMKKYGA-HAATDVTGFGLY 268
              G Q    ++++ +  T ADI + Y +A  SM+ LN   A+L+ + GA HA TD+TGFG+ 
Sbjct: 478149 GRQARVHYSKIEQVLTPADICRAYDVACLSMAHLNARAAQLLLESGAAHAVTDITGFGIL 477970

Query: 269    GHAENLASHQTADVDFHLDTLPIIKNVREIAETL--GRGAKLLAGKAVETSGGLLICL-- 324
              GHA+NLA +Q A VD  +D LPII+ +      L  G+  +LL G + ETSGGLLIC   
Sbjct: 477969 GHAQNLARNQKAPVDMEIDVLPIIRGMTSADRALQGGKMFRLLEGFSAETSGGLLICFGA 477790

Query: 325    ------PREAAAGFCEEYRRCTKH-EAWIVGHVEKGARGVKMNPNLNILSV 368
                     +  A  FCE+      H  AWIVG V  G+R  ++  ++ IL V
Sbjct: 477789 SSTERSSQVVARQFCEKLATVDDHWPAWIVGRVVPGSREARILDHVKILEV 477637


>dbj|AP006499.2| Cyanidioschyzon merolae DNA, chromosome 17, complete genome, complete
              sequence
          Length = 1232258

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 296    REIAETLGRGAKLLAGKAVETSGGLLICLPREAAAGFCEEY 336
              R++A      A+  A  A++  GGL++C   EA A  C ++
Sbjct: 191947 RQLASLPTAAARQRAQHAIQRQGGLVVCDDLEACAKLCSDF 191825


>dbj|AP006490.2| Cyanidioschyzon merolae DNA, chromosome 8, complete genome, complete
              sequence
          Length = 739753

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -2

Query: 147    KACNAPVQIG--SIAENPWCVIGGAASAVCHRSELIMPYN--AQPGDA 190
              + CN  + +   S+A NPW      A+A   RSE   P N  A  GDA
Sbjct: 704883 RKCNFAISLSVRSVATNPWAASFDIAAAAPRRSETESPTNTCATSGDA 704740


>dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, complete genome, complete
              sequence
          Length = 810151

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 163    WCVIGGAASAVCHRSELIMPYNAQPGDALVLTKPLGT 199
              WC     +  +CH +E I P NA P     L   LGT
Sbjct: 227053 WCGYSTESERLCHTTEDIGPRNASPDTESGLIINLGT 227163


>dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete
              sequence
          Length = 1253087

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -2

Query: 287    DTLPIIKNVREIAETLGRGAKLLAGKAVETSGGLLICLPREAAAGFCEEYRRCTKHEAWI 346
              +  P I+N+RE    L RG   L  + +     L  C PREA     ++ ++C++H    
Sbjct: 383854 EATPSIENLRE---WLLRGT--LPRRMLRALASLATCEPREATCLLLQQLQQCSEHVPLA 383690

Query: 347    VGHV 350
                HV
Sbjct: 383689 SVHV 383678


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,712,800
Number of Sequences: 20
Number of extensions: 99765
Number of successful extensions: 559
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 130
length of query: 369
length of database: 5,515,582
effective HSP length: 97
effective length of query: 272
effective length of database: 5,513,642
effective search space: 1499710624
effective search space used: 1499710624
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)