TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000055_1.0 # Protein # Selenophosphate synthetase 1 (SPS1)
# Anopheles gambiae # Complete
         (396 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, comp...   167   5e-42
dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, compl...    29   2.8  
dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp...    28   8.3  

>dbj|AP006498.2| Cyanidioschyzon merolae DNA, chromosome 16, complete genome, complete
              sequence
          Length = 908485

 Score =  167 bits (424), Expect = 5e-42
 Identities = 108/269 (40%), Positives = 151/269 (56%), Gaps = 47/269 (17%)
 Frame = -2

Query: 37     FRLTRFADLKGRCCKVPK-EVLEKLVSS--LQQDYMQDPDQPFMPMS------------S 81
              FRLTR++ LKG  CKVP+ E+LE + ++  L +  M+   +P   MS            S
Sbjct: 479109 FRLTRYSTLKGCGCKVPQSELLEWMTATKNLLRSPMKSFSRPGGLMSTSNTESSTPGDVS 478930

Query: 82     PRIGIGLDCSVIPLRHGG--------------------LCMVQTTDFFYPIVDDPYMMGK 121
                +G+G+D SV+ L                        L ++ TTDFF+P+V+DPY+MG+
Sbjct: 478929 VELGVGMDASVVRLTQLSSRQQSTEKDAENAPSFGTQPLYLISTTDFFFPLVEDPYLMGR 478750

Query: 122    IACANVLSDLYAMGV-TEVDNMLMLLAVSTKMIEKE-RDVVIPLIMRGFKDSALEAGTSV 179
              IA ANVLSD YA+G+ T    MLML+  +T++     R  V   +M GF D+  EAGT V
Sbjct: 478749 IAAANVLSDAYALGIRTPPSTMLMLVCAATEIEPPALRAGVTQTMMAGFIDACHEAGTQV 478570

Query: 180    TGGHSVVNPWCTIGGVATTICQQNEFIVPDNAVVGDVLVLTKALGTQVAVNAHQWLDQSE 239
              TGG + +NPW  IGGVA  +  + EF++PD A  GD +VLTK LGTQVA+N +QWL Q E
Sbjct: 478569 TGGQTTLNPWPLIGGVAEVVLPRGEFLMPDAAQPGDTIVLTKPLGTQVAINLYQWLGQME 478390

Query: 240    RWNRIKLVVS----------EEDVRKAYH 258
                + + L+ S           ED R++ H
Sbjct: 478389 DAHYLHLLESLETTQQQEYGPEDTRRSVH 478303



 Score =  114 bits (286), Expect = 5e-26
 Identities = 70/164 (42%), Positives = 99/164 (60%), Gaps = 12/164 (7%)
 Frame = -2

Query: 241    WNRIKLVVSEEDVRKAYHRAMDSMSRLNRVAARLMHKYNA-HGATDVTGFGLLGHAQTLA 299
              +++I+ V++  D+ +AY  A  SM+ LN  AA+L+ +  A H  TD+TGFG+LGHAQ LA
Sbjct: 478128 YSKIEQVLTPADICRAYDVACLSMAHLNARAAQLLLESGAAHAVTDITGFGILGHAQNLA 477949

Query: 300    SHQKNEVSFVIHNLPVIAKMAAVAKAC--GNMFQLLQGHSAETSGGLLICLPREQ----- 352
               +QK  V   I  LP+I  M +  +A   G MF+LL+G SAETSGGLLIC          
Sbjct: 477948 RNQKAPVDMEIDVLPIIRGMTSADRALQGGKMFRLLEGFSAETSGGLLICFGASSTERSS 477769

Query: 353    ---AAAYCKDIEK-QEGCQAWIIGIVEKGSRTARIIDKPRVIEV 392
                 A  +C+ +    +   AWI+G V  GSR ARI+D  +++EV
Sbjct: 477768 QVVARQFCEKLATVDDHWPAWIVGRVVPGSREARILDHVKILEV 477637


>dbj|AP006485.2| Cyanidioschyzon merolae DNA, chromosome 3, complete genome, complete
              sequence
          Length = 481791

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +3

Query: 294    HAQTLASHQKNEVSFVIHNLPVIAKMAAVAKACGNMFQLLQGHSAETSGGLLICLPREQA 353
              HA++   H +    FV H+      ++A      N  Q  QG S+  S      LPR Q 
Sbjct: 425823 HAESSTKHHETSYEFVAHDY*---NLSAGLPHLQNFQQKSQGMSSANSAQFNFHLPRAQC 425993

Query: 354    AAYC 357
                YC
Sbjct: 425994 FVYC 426005


>dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete
              sequence
          Length = 1621617

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = +1

Query: 242    NRIKLVVSEEDVRKAYHRAMDSM------SRLNRVAARLMHKYNAHGATDVTGFGLLGHA 295
              +R+KLV S  +    +H  + +        R+ R A R  HK    GAT  TG  ++   
Sbjct: 300607 DRLKLVFS*TEPNSEHHGGLRTR*LAWHECRVRRAAQRQQHKPRRSGATLATGL-VIQRT 300783

Query: 296    QTLASHQ 302
              Q L  H+
Sbjct: 300784 QRLPEHR 300804


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.322    0.136    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,998,170
Number of Sequences: 20
Number of extensions: 121501
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 85
length of query: 396
length of database: 5,515,582
effective HSP length: 98
effective length of query: 298
effective length of database: 5,513,622
effective search space: 1643059356
effective search space used: 1643059356
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)