TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000112_1.0 # Protein # Selenoprotein K (SelK) # Mus
musculus # Complete
         (94 letters)

Database: B.hominis/genome.fa 
           54 sequences; 18,817,245 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN668683.1| Blastocystis hominis, Singapore isolate B (sub-t...    25   3.9  
emb|FN668639.1| Blastocystis hominis, Singapore isolate B (sub-t...    25   5.1  

>emb|FN668683.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_5
          Length = 953317

 Score = 25.4 bits (54), Expect = 3.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 2      VYISNGQVLDSRNQSPWRVSFLTDFFW 28
              +Y  NG++L  RN+ PW +       W
Sbjct: 722153 IYSRNGKLLAYRNREPWTLLNFEAIIW 722073


>emb|FN668639.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_1
          Length = 1866585

 Score = 25.0 bits (53), Expect = 5.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 3      YISNGQVLDSRNQSPWRVSFLTDFFWGIAEFVVFFF 38
              YI +   L S++  P  V  L  F WG   +VVF F
Sbjct: 833489 YIQHEIELQSQSHHPCIVPLLECFRWGKRIYVVFSF 833596


  Database: B.hominis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 18,817,245
  Number of sequences in database:  54
  
Lambda     K      H
   0.332    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,103,417
Number of Sequences: 54
Number of extensions: 7791
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 8
length of query: 94
length of database: 6,272,415
effective HSP length: 69
effective length of query: 25
effective length of database: 6,268,689
effective search space: 156717225
effective search space used: 156717225
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (24.3 bits)