TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo
sapiens # Complete
         (94 letters)

Database: B.hominis/genome.fa 
           54 sequences; 18,817,245 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN668683.1| Blastocystis hominis, Singapore isolate B (sub-t...    26   3.0  
emb|FN668638.1| Blastocystis hominis, Singapore isolate B (sub-t...    25   5.1  
emb|FN668672.1| Blastocystis hominis, Singapore isolate B (sub-t...    25   6.7  

>emb|FN668683.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_5
          Length = 953317

 Score = 25.8 bits (55), Expect = 3.0
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
 Frame = -3

Query: 2      VYISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVLFFKTLLQQD--------VKKRRSYG 53
              +Y  NG++L  R++ PW L       W I E    F     Q+         + K  S  
Sbjct: 722153 IYSRNGKLLAYRNREPWTLLNFEAIIW-IQERKSCFICCQAQEKKEFSL*ILISKMSSSS 721977

Query: 54     NSSDSRY 60
              NS +S Y
Sbjct: 721976 NSFESEY 721956


>emb|FN668638.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_0
          Length = 1966360

 Score = 25.0 bits (53), Expect = 5.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 39     KTLLQQDVKKRRSYGNSSDSRYDD 62
              +T+L  DV+  R   NSS+ RYDD
Sbjct: 727020 ETVLCLDVEVWRQLENSSEPRYDD 727091



 Score = 25.0 bits (53), Expect = 5.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 39     KTLLQQDVKKRRSYGNSSDSRYDD 62
              +T+L  DV+  R   NSS+ RYDD
Sbjct: 827651 ETVLCLDVEVWRQLENSSEPRYDD 827580



 Score = 24.6 bits (52), Expect = 6.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 18     WRLSLITDFFWGIAEFVVLFFKTLLQQ 44
              W  ++ TD+   I+  + L FKTLLQ+
Sbjct: 136042 WLTTIETDWDRNISSVIKLSFKTLLQE 136122


>emb|FN668672.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_4
          Length = 1031885

 Score = 24.6 bits (52), Expect = 6.7
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +2

Query: 16     SPWRLSLITDFFWGIAEFVVLFFKTLLQQDVKKRRSYGNSSD 57
              S   + ++     G+A  V + F    + D K+  +YGN+ D
Sbjct: 452966 SKMEVPIMVSSILGVASSVFIMFSAAARLDKKQLDNYGNNPD 453091


  Database: B.hominis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 18,817,245
  Number of sequences in database:  54
  
Lambda     K      H
   0.325    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,446,324
Number of Sequences: 54
Number of extensions: 14001
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 21
length of query: 94
length of database: 6,272,415
effective HSP length: 69
effective length of query: 25
effective length of database: 6,268,689
effective search space: 156717225
effective search space used: 156717225
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)