TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000044_1.0 # Protein # Selenoprotein K1 (SelK1) #
Drosophila melanogaster # Complete
         (110 letters)

Database: B.hominis/genome.fa 
           54 sequences; 18,817,245 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN668661.1| Blastocystis hominis, Singapore isolate B (sub-t...    26   3.4  
emb|FN668639.1| Blastocystis hominis, Singapore isolate B (sub-t...    25   5.7  
emb|FN668643.1| Blastocystis hominis, Singapore isolate B (sub-t...    25   5.7  
emb|FN668638.1| Blastocystis hominis, Singapore isolate B (sub-t...    24   9.8  
emb|FN668641.1| Blastocystis hominis, Singapore isolate B (sub-t...    24   9.8  
emb|FN668644.1| Blastocystis hominis, Singapore isolate B (sub-t...    24   9.8  

>emb|FN668661.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_3
          Length = 1354787

 Score = 25.8 bits (55), Expect = 3.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 17     DWRRIVELFVGIWFAIKQLF 36
              DWRR V LF+ ++F+    F
Sbjct: 468682 DWRRAVFLFISLFFSFSTFF 468741


>emb|FN668639.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome shotgun
               sequence assembly, scaffold_1
          Length = 1866585

 Score = 25.0 bits (53), Expect = 5.7
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 4       IDHNGRVWEKRPWDWRRIVELF 25
               I  N R W    W+WR +  +F
Sbjct: 1048684 IRRNERKWRSMKWNWRLVYAIF 1048619


>emb|FN668643.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_13
          Length = 486799

 Score = 25.0 bits (53), Expect = 5.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 10     VWEKRPWDWRRIVELFVGIWFAIKQLF 36
              +W    W W+R + L VG  FA+ ++F
Sbjct: 316315 IWFSSLWAWKRKLPLPVGWAFAVFRVF 316395


>emb|FN668638.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome shotgun
               sequence assembly, scaffold_0
          Length = 1966360

 Score = 24.3 bits (51), Expect = 9.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 13      KRPWDWRRIVELFVGI 28
               +RPW+W  I + +VG+
Sbjct: 1069811 QRPWEWSVIKQYYVGL 1069858



 Score = 24.3 bits (51), Expect = 9.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 9      RVWEKRPWDWR 19
              R W  RPW WR
Sbjct: 341365 RSWSARPWKWR 341333


>emb|FN668641.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_11
          Length = 591523

 Score = 24.3 bits (51), Expect = 9.8
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -1

Query: 18     WRRIVELFVG 27
              W+RIVELFVG
Sbjct: 394183 WKRIVELFVG 394154


>emb|FN668644.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_14
          Length = 485911

 Score = 24.3 bits (51), Expect = 9.8
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -3

Query: 14     RPWDWRRIVELFVGIWFAIKQLF 36
              +PW WR ++ +F+  W+ +K++F
Sbjct: 153746 KPW-WRYLL*VFLR*WYMMKKMF 153681


  Database: B.hominis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 18,817,245
  Number of sequences in database:  54
  
Lambda     K      H
   0.328    0.144    0.508 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,110,803
Number of Sequences: 54
Number of extensions: 20793
Number of successful extensions: 244
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 69
length of query: 110
length of database: 6,272,415
effective HSP length: 82
effective length of query: 28
effective length of database: 6,267,987
effective search space: 175503636
effective search space used: 175503636
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)