TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= sel1 selenoprotein1 [Plasmodium falciparum 3D7]; partially from
XP_001348206.1 # QUERY
         (116 letters)

Database: B.hominis/genome.fa 
           54 sequences; 18,817,245 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN668649.1| Blastocystis hominis, Singapore isolate B (sub-t...    25   5.2  
emb|FN668688.1| Blastocystis hominis, Singapore isolate B (sub-t...    25   8.8  

>emb|FN668649.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_19
          Length = 315857

 Score = 25.4 bits (54), Expect = 5.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 7      NKKNADYEIFLRDRKLKYEKIRKRNALHNKFIL 39
              N+ ++D EIF + R +K+E    R  L  K ++
Sbjct: 109231 NENSSDVEIFSKFRSMKFENDLMRELLKEKLMV 109133


>emb|FN668688.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
             shotgun sequence assembly, scaffold_6
          Length = 900598

 Score = 24.6 bits (52), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 13    YEIFLRDRKLKYEKIRKRNALHNKF 37
             YEI L D K+ Y+K  K    +NKF
Sbjct: 31924 YEIELDDFKIGYKKANKTVKTNNKF 31998


  Database: B.hominis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 18,817,245
  Number of sequences in database:  54
  
Lambda     K      H
   0.318    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,369,650
Number of Sequences: 54
Number of extensions: 9807
Number of successful extensions: 44
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 6
length of query: 116
length of database: 6,272,415
effective HSP length: 83
effective length of query: 33
effective length of database: 6,267,933
effective search space: 206841789
effective search space used: 206841789
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)