TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2)
# Homo sapiens # Complete
         (448 letters)

Database: B.hominis/genome.fa 
           54 sequences; 18,817,245 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FN668651.1| Blastocystis hominis, Singapore isolate B (sub-t...   231   7e-61
emb|FN668642.1| Blastocystis hominis, Singapore isolate B (sub-t...    32   0.44 
emb|FN668639.1| Blastocystis hominis, Singapore isolate B (sub-t...    29   3.8  
emb|FN668689.1| Blastocystis hominis, Singapore isolate B (sub-t...    29   4.9  

>emb|FN668651.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_20
          Length = 315468

 Score =  231 bits (588), Expect = 7e-61
 Identities = 130/305 (42%), Positives = 174/305 (57%), Gaps = 13/305 (4%)
 Frame = +3

Query: 134    VQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNXXXXXXXXXXXXXXXREKVTP 193
              + TTDFFYP V+DPY+ G+IA  NVLSD+YAMG+TE D                 + VT 
Sbjct: 201756 ISTTDFFYPSVDDPYVQGKIAACNVLSDMYAMGVTEVDTMLMILGVSVDMEPDAMDYVTK 201935

Query: 194    LMVKGFR-----------DXXXXXXXXXXXXXXXXNPWIIIGGVATVVCQPNE-FIMPDS 241
               +++GF            D                NPW +IGGVA+  C+  E FI P  
Sbjct: 201936 ELIRGFNGFPFLSSL*RVDQARVAVTNVTGGQTVRNPWPMIGGVASSTCREGEDFIRPVH 202115

Query: 242    AVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVSREEVELAYQEAMFNMATLNRT 301
                 GDV+VLTKPLGTQ+AVN  +WL    ++N+V+ V+S E+V  +Y+ AM +M+TLN  
Sbjct: 202116 GEPGDVIVLTKPLGTQLAVNMFEWLRTAAKFNRVRAVLSVEDVVASYKMAMESMSTLNLE 202295

Query: 302    AAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAV-SKASGRF 360
               A LM   +AH  TD+TGFG+ GH+ NLA +Q   V  V+  LPII  MA V S  +  +
Sbjct: 202296 GARLMWKHHAHGCTDVTGFGVTGHATNLAAEQEKAVDLVVDTLPIIKNMARVESHLNNNW 202475

Query: 361    GLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARIIDKP 420
               L +G SAETSGGL+I +  E A  +   IK  K   GH AWI+G V +G R   +++ P
Sbjct: 202476 NLFKGRSAETSGGLMIMMRPEDAEAY---IKEYKEITGHDAWIIGKVVEGQRKGYVVENP 202646

Query: 421    RVIEV 425
               +IEV
Sbjct: 202647 TLIEV 202661


>emb|FN668642.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_12
          Length = 491035

 Score = 32.3 bits (72), Expect = 0.44
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +2

Query: 325    HSQNLAKQQRNEVSFVIHNLPIIAKMAAVSKASGRFGLLQGTSA-ETSGGLLICLPRE 381
              H   L    R E S    +LP++     ++++  R  +LQG  A ETSGG  + LP +
Sbjct: 190847 HGHWLRSHHRREPSLPPRSLPVLFLSFFLARSPRRTNVLQGLGATETSGGACVSLPTD 191020


>emb|FN668639.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
              shotgun sequence assembly, scaffold_1
          Length = 1866585

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = -3

Query: 254    LGTQVAVNAHQWLDNPER---WNKVKMVVSREEVELAYQEAMFNMAT 297
              +G +   N    L+  ER   WN++K ++S  E E+  +EAMF  A+
Sbjct: 950590 VGVRQERNVQGCLEGEEREKWWNEMKEILSLTEQEIKEREAMFGKAS 950450


>emb|FN668689.1| Blastocystis hominis, Singapore isolate B (sub-type 7) whole genome
             shotgun sequence assembly, scaffold_7
          Length = 870417

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
 Frame = -3

Query: 42    ALGLSPSWRLTGFSGM-KGUGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEE----- 95
             A G++P+    G +G+ +G    +PQ     L++    P V  PLG+G V G        
Sbjct: 63646 AKGVAPA----GSAGLAQGVVAGMPQ-----LVSPAVIPAVNRPLGQGYVPGVAALMPFM 63494

Query: 96    -----ASQEAGLPAGAGPSPTFPA 114
                  A Q   LPAG  P+  FPA
Sbjct: 63493 QPAYFAQQGGPLPAGMAPTARFPA 63422


  Database: B.hominis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 18,817,245
  Number of sequences in database:  54
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,907,073
Number of Sequences: 54
Number of extensions: 110782
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 570
Number of HSP's gapped (non-prelim): 86
length of query: 448
length of database: 6,272,415
effective HSP length: 100
effective length of query: 348
effective length of database: 6,267,015
effective search space: 2180921220
effective search space used: 2180921220
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)