TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000112_1.0 # Protein # Selenoprotein K (SelK) # Mus
musculus # Complete
         (94 letters)

Database: A.taiwanensis/genome.fa 
           5379 sequences; 6,149,411 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABJQ01003031.1| Ascogregarina taiwanensis Contig3362, whole g...    26   0.98 
gb|ABJQ01002289.1| Ascogregarina taiwanensis Contig2584, whole g...    26   0.98 
gb|ABJQ01001170.1| Ascogregarina taiwanensis Contig1347, whole g...    23   4.8  
gb|ABJQ01002085.1| Ascogregarina taiwanensis Contig2360, whole g...    23   6.3  

>gb|ABJQ01003031.1| Ascogregarina taiwanensis Contig3362, whole genome shotgun sequence
          Length = 2066

 Score = 25.8 bits (55), Expect = 0.98
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 24   TDFFWGIAEFVVFFFKTL 41
            T+F W IAE V+ + KT+
Sbjct: 1523 TEFIWSIAEIVMAYLKTM 1470


>gb|ABJQ01002289.1| Ascogregarina taiwanensis Contig2584, whole genome shotgun sequence
          Length = 1422

 Score = 25.8 bits (55), Expect = 0.98
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 24   TDFFWGIAEFVVFFFKTL 41
            T+F W IAE V+ + KT+
Sbjct: 1357 TEFIWSIAEIVMAYLKTM 1410


>gb|ABJQ01001170.1| Ascogregarina taiwanensis Contig1347, whole genome shotgun
          sequence
          Length = 677

 Score = 23.5 bits (49), Expect = 4.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 4  ISNGQVLDSRNQSPWRVSFL 23
          I +GQVLD+R  +   +SFL
Sbjct: 52 IGSGQVLDARRMTQLLISFL 111


>gb|ABJQ01002085.1| Ascogregarina taiwanensis Contig2360, whole genome shotgun sequence
          Length = 1478

 Score = 23.1 bits (48), Expect = 6.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 16  SPWRVSFLTDFFWGIAEFVVFFFKTLLQQDVK 47
           SPW+  F    FW I   V      ++ +DVK
Sbjct: 76  SPWQAVFFEPQFWFIRLSVADICVRIVAKDVK 171


  Database: A.taiwanensis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 6,149,411
  Number of sequences in database:  5379
  
Lambda     K      H
   0.332    0.142    0.451 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,644
Number of Sequences: 5379
Number of extensions: 2397
Number of successful extensions: 25
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of query: 94
length of database: 2,049,803
effective HSP length: 64
effective length of query: 30
effective length of database: 1,705,547
effective search space: 51166410
effective search space used: 51166410
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 46 (22.3 bits)