TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: S.parasitica/genome.fa 1445 sequences; 53,132,636 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gb|GG744018.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 54 7e-07 gb|GG743983.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 37 1e-04 gb|GG743905.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 35 0.41 gb|GG743903.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 35 0.54 gb|GG743965.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 34 0.91 gb|GG743885.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 33 1.2 gb|GG743889.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 33 1.6 gb|GG743887.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 33 2.0 gb|GG743960.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 32 3.5 gb|GG743911.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 32 3.5 gb|GG743883.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 31 5.9 gb|GG743892.1| Saprolegnia parasitica CBS 223.65 genomic scaffol... 31 7.7 >gb|GG744018.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.136, whole genome shotgun sequence Length = 76365 Score = 54.3 bits (129), Expect = 7e-07 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 32/152 (21%) Frame = +3 Query: 621 FPKIHSRRFRDYCSQM-LSKEVDACVTDLLKELVRFQ----------------DRMYQKD 663 FP + Y ++ + E+ VT LL L++ Q +R + Sbjct: 69882 FPSTRNAESLPYSQKIDVGGELQVGVTALLGRLMQLQVTALIHEDDTL*SHE*ERARLTN 70061 Query: 664 PVKAKTKRRLVLGLREVXXXXXXXXX---------------XCVIISPNCEKIQSKGGLD 708 P+KAK RRLV GLREV C++++ + ++ ++GGLD Sbjct: 70062 PLKAKKTRRLVFGLREVATCLLGRRL*SSL*VKRGLKNLKVMCLLVAYDVDECAAEGGLD 70241 Query: 709 DTLHTIIDYACEQNIPFVFALNRKALGRSLNK 740 D + +ID A IP VFAL++ +GR+ N+ Sbjct: 70242 DKIVELIDLARANKIPVVFALSKYDIGRATNQ 70337 Score = 35.4 bits (80), Expect = 0.31 Identities = 19/41 (46%), Positives = 28/41 (68%) Frame = +2 Query: 731 RKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVELTVAARQ 771 R+ LG+++ K + VS VGI+S DGA D + V+ TVA+ Q Sbjct: 70352 RRKLGKAVLKTIRVSCVGIYSVDGANDMW-ASVQKTVASLQ 70471 >gb|GG743983.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.101, whole genome shotgun sequence Length = 114814 Score = 36.6 bits (83), Expect(2) = 1e-04 Identities = 16/50 (32%), Positives = 32/50 (64%) Frame = +2 Query: 691 CVIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNK 740 C++++ + ++ ++GGLDD + +ID A I VFAL++ +G + N+ Sbjct: 10856 CLLVAYDVDECAAEGGLDDKIVELIDLARANKITVVFALSKYNIGWATNQ 11005 Score = 35.4 bits (80), Expect = 0.31 Identities = 19/41 (46%), Positives = 28/41 (68%) Frame = +1 Query: 731 RKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVELTVAARQ 771 R+ LG+++ K + VS VGI+S DGA D + V+ TVA+ Q Sbjct: 11020 RRKLGKAVLKTIRVSCVGIYSVDGANDMW-TSVQKTVASLQ 11139 Score = 29.3 bits (64), Expect(2) = 1e-04 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = +3 Query: 657 DRMYQKDPVKAKTKRRLVLGLREV 680 +R +P+KAK RRLV GLREV Sbjct: 10701 ERARLTNPLKAKKTRRLVFGLREV 10772 >gb|GG743905.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.23, whole genome shotgun sequence Length = 458240 Score = 35.0 bits (79), Expect = 0.41 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 4/127 (3%) Frame = -1 Query: 489 CASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKI--ILKERQERKQR 546 C GRR + L SS P + PK KKP + + LK ++ Sbjct: 273257 CDRDRHGRREASAPPRRQSLSSSTPRRSSRRLSTTPKKKKPLAFATLNTCLKTTED---- 273090 Query: 547 LQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGM--DELISTPSVEDKSEEPPGTE 604 +E+ A SD DG++ +D + + E M DE+ +T +++ +EE +E Sbjct: 273089 -EEDEEVFAAASDSAGDGDASAEDDDDFIVDDNHIEYMNDDEVATTNGIDEDNEEHVYSE 272913 Query: 605 LQRDTEA 611 + D EA Sbjct: 272912 -EEDIEA 272895 >gb|GG743903.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.21, whole genome shotgun sequence Length = 505868 Score = 34.7 bits (78), Expect = 0.54 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Frame = -2 Query: 758 QFHKMVELTVAARQA-YKTMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEKE 816 +F K++++ + A Q K E V ++G+P P T P PA+ GP + K+ Sbjct: 36307 KFFKLLKMGMPAMQVELKMQSEGVDPSILGDPEKLVPDPNSTVAP--PAQAGPVLVAVKD 36134 Query: 817 EPHYIEIWK 825 P Y + +K Sbjct: 36133 HPKYAKFFK 36107 >gb|GG743965.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.83, whole genome shotgun sequence Length = 164188 Score = 33.9 bits (76), Expect = 0.91 Identities = 22/55 (40%), Positives = 34/55 (61%) Frame = -1 Query: 731 RKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVELTVAARQAYKTMLENVQQELV 785 R+A+GR L A+P + VGI DG + F ++VEL AR+ + +NV +EL+ Sbjct: 14803 RRAVGRRL-LALP-NDVGIVLEDGRRRHFGRVVELVETAREHGRRQQQNVHEELL 14645 >gb|GG743885.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.3, whole genome shotgun sequence Length = 1275006 Score = 33.5 bits (75), Expect = 1.2 Identities = 28/102 (27%), Positives = 43/102 (42%) Frame = -2 Query: 274 NNPNESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSAD 333 N P + TANA ++ PS R +S+ P + T+ + P KT ASS Sbjct: 1245299 NQPAAATTANAISHQPSAARSISYDPETQCPKPKTWTQ-TKKPNPTHHAA*TKTNASSQS 1245123 Query: 334 PKNVSIPSSEALSSDPSYNKEKHIIHPTQKSKASQGSDLEQN 375 P SS P + KH+ P+ K+K + +Q+ Sbjct: 1245122 P-----------SSTP--RERKHVNKPSAKTKTLSCTTTDQD 1245036 >gb|GG743889.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.7, whole genome shotgun sequence Length = 943373 Score = 33.1 bits (74), Expect = 1.6 Identities = 23/100 (23%), Positives = 39/100 (39%), Gaps = 7/100 (7%) Frame = -2 Query: 285 ATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSM-------INLKTIASSADPKNV 337 ++ S + SWT G + TLST A P +++ + T SS + + Sbjct: 616951 SSRQASTSSSRSWTRRGRTTKSTLSTSTRA*PLSISGISRRSRRRTRCSTFPSSRSSRAI 616772 Query: 338 SIPSSEALSSDPSYNKEKHIIHPTQKSKASQGSDLEQNEA 377 + PSS SS + + S+ S S ++ A Sbjct: 616771 TPPSSSTPSSSTRSRARRRTFTRCRTSRTSSASSFKRKSA 616652 >gb|GG743887.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.5, whole genome shotgun sequence Length = 1129684 Score = 32.7 bits (73), Expect = 2.0 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = +1 Query: 245 VHSVSTDISLLREVVKPAAVLSKGEIVVKNNPNESVTANAATNSPSCT 292 V SV D +LLR+ +PA +G +VV NP + +A P+CT Sbjct: 1086064 VESVEHDFALLRDEEEPAD--HRGVVVVAGNPQMASKTDAPKRPPNCT 1086201 >gb|GG743960.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.78, whole genome shotgun sequence Length = 150855 Score = 32.0 bits (71), Expect = 3.5 Identities = 18/64 (28%), Positives = 30/64 (46%) Frame = +1 Query: 286 TNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASSADPKNVSIPSSEAL 345 T S S + +W P R+TLST ++ TS + +S + S+P+++A Sbjct: 98467 TRSSSDSMPSAWRPSSRPCRRTLSTSAASTSSRATSSWPARPSTASCASRPSSVPAAKAT 98646 Query: 346 SSDP 349 S P Sbjct: 98647 SCRP 98658 >gb|GG743911.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.29, whole genome shotgun sequence Length = 422699 Score = 32.0 bits (71), Expect = 3.5 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = -2 Query: 494 RGRRMSQMKTPHNPLDSSAPLMKKGKQR 521 RGRR ++ +T H PLDS AP + G R Sbjct: 253459 RGRRPTRWQTGHPPLDSGAPAPRPGSSR 253376 >gb|GG743883.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.1, whole genome shotgun sequence Length = 1615555 Score = 31.2 bits (69), Expect = 5.9 Identities = 21/81 (25%), Positives = 35/81 (43%) Frame = +1 Query: 490 ASGERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQE 549 A E+GRR + +TP +PL S ++ + + A +PT+ + ++R R Sbjct: 677002 AGEEQGRRQAPPRTPISPLVSRCLVVLSVRTNKSL*ASRPTTTRH--PRKRSRTSARFCT 677175 Query: 550 NAVSPAFTSDDTQDGESGGDD 570 A P S D + DD Sbjct: 677176 TATRPCCRSSSAYDDDDDDDD 677238 Score = 30.8 bits (68), Expect = 7.7 Identities = 20/61 (32%), Positives = 27/61 (44%) Frame = +1 Query: 750 FSYDGAQDQFHKMVELTVAARQAYKTMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGP 809 F D +F K+V +Q KT E+ ++ V RP+APP P DGP Sbjct: 217987 FPIDYQHREFEKLVHAKTVIKQVRKTKKEDESRDPVRVLRPKAPPP-PAIESMREYLDGP 218163 Query: 810 P 810 P Sbjct: 218164 P 218166 >gb|GG743892.1| Saprolegnia parasitica CBS 223.65 genomic scaffold supercont1.10, whole genome shotgun sequence Length = 790954 Score = 30.8 bits (68), Expect = 7.7 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +2 Query: 720 EQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ 756 ++N+P+VF ++ ALGR+ + PV I S D +Q Sbjct: 580880 DKNVPYVFVPSKVALGRACGVSRPVISASITSNDASQ 580990 Database: S.parasitica/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 53,132,636 Number of sequences in database: 1445 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,205,675 Number of Sequences: 1445 Number of extensions: 663310 Number of successful extensions: 4162 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 142 Number of HSP's successfully gapped in prelim test: 96 Number of HSP's that attempted gapping in prelim test: 2826 Number of HSP's gapped (non-prelim): 2360 length of query: 854 length of database: 17,710,878 effective HSP length: 112 effective length of query: 742 effective length of database: 17,549,038 effective search space: 13021386196 effective search space used: 13021386196 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 67 (30.4 bits)