TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: P.ultimum/genome.fa 82 sequences; 42,801,618 total letters Searching.................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL376616.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 40 0.010 gb|GL376571.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 39 0.018 gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 35 0.33 gb|GL376626.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 35 0.44 gb|GL376607.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 2.8 gb|GL376634.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 3.7 gb|GL376615.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 32 3.7 gb|GL376613.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 4.8 gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 4.8 gb|GL376599.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 6.3 gb|GL376573.1| Pythium ultimum DAOM BR144 unplaced genomic scaff... 31 6.3 >gb|GL376616.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582019, whole genome shotgun sequence Length = 205912 Score = 40.0 bits (92), Expect = 0.010 Identities = 22/76 (28%), Positives = 40/76 (52%) Frame = +1 Query: 656 QDRMYQKDPVKAKTKRRLVLGLREVXXXXXXXXXXCVIISPNCEKIQSKGGLDDTLHTII 715 Q+R + ++ ++ K RRLVLGL EV +I+ + E+ LD+ L I+ Sbjct: 54148 QERAHHQNSLQDKRSRRLVLGLHEVKRGVLAKKICLLIVGTDIEQCDV---LDEKLDEIL 54318 Query: 716 DYACEQNIPFVFALNR 731 A +Q +P ++ ++R Sbjct: 54319 AIATKQEVPIIYPMSR 54366 Score = 39.3 bits (90), Expect = 0.018 Identities = 19/43 (44%), Positives = 29/43 (67%) Frame = +2 Query: 722 NIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVE 764 NI F+ R+ LGR L+K+V VS VG++S +GA D F +++ Sbjct: 54410 NIFVCFSFIRRKLGRVLSKSVRVSCVGVYSMEGANDLFQDILK 54538 >gb|GL376571.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581381, whole genome shotgun sequence Length = 502691 Score = 39.3 bits (90), Expect = 0.018 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Frame = -2 Query: 520 QREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELS 579 Q +I K +K K+ KE++ K +E SDD +D + GDD+ + +L Sbjct: 152317 QTKIAKLRKEKEAAKLAKKEKKALKAAKKEKKTK----SDDKEDEDESGDDEEADNEDLD 152150 Query: 580 GPEGMDELISTPSVEDKS----EEPPGTELQRDTE 610 E D +++S EE PG E Q D E Sbjct: 152149 ASEKADSDHEGEDDDEESSDDEEEQPGYEHQADDE 152045 Score = 31.6 bits (70), Expect = 3.7 Identities = 18/74 (24%), Positives = 36/74 (48%) Frame = +3 Query: 396 TVQEPPRIEDAEEFPNLAVASERRDRIETPKFQSKQQPQDNFKNNVKKSQLPVQLDLGGM 455 T+Q PR + +E +L A+ R R +++ + N++ + P + GG+ Sbjct: 25674 TLQRVPRRDHSERHGDLQRANPRPARTRCGQYEPASASRSNWELCSRPHCSPCSVARGGL 25853 Query: 456 LTALEKKQHSQHAK 469 E++Q S+HA+ Sbjct: 25854 RADQERQQESKHAR 25895 >gb|GL376638.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582041, whole genome shotgun sequence Length = 1261388 Score = 35.0 bits (79), Expect = 0.33 Identities = 18/55 (32%), Positives = 31/55 (56%) Frame = -1 Query: 508 LDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQ 562 L+SSA + GK + AKKP +++ +R++ + RL A P T++DT+ Sbjct: 810755 LESSASTIANGKAAPLEGAKKPVRVRRSKTLQRRDGRARLASMAEEPDETAEDTK 810591 >gb|GL376626.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582029, whole genome shotgun sequence Length = 1550222 Score = 34.7 bits (78), Expect = 0.44 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Frame = -2 Query: 538 KERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKS 597 ++RQ Q+++E A S F SDD DGE D+ E+ E E +D + E++ Sbjct: 1044115 RQRQTDLQKMRELARSDEF-SDDESDGEESDDEN--EEDEEEKQENLD------TFENRR 1043963 Query: 598 EEPPGTEL--QRDTEASHLAPNHTT 620 P L +R + PNHTT Sbjct: 1043962 PSPASVSLTPRRHSPYHRTQPNHTT 1043888 Score = 31.2 bits (69), Expect = 4.8 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Frame = -3 Query: 262 AAVLSKGEIVVKNNPNESVTANAATNSPSCTRELSWTPMGYVVRQTLST--ELSAAPKNV 319 AA K I V NP+ SV A TNS + R L P+ + + T S E+ +P N Sbjct: 593271 AACFRKSVISVSKNPSYSVLARVETNSIALLR*L*KLPVTFTLSTTASVFPEIWISPSNS 593092 Query: 320 TSMINLKTIASSADPKNV 337 + T ++ P V Sbjct: 593091 LDESSAST*LTNTAPSGV 593038 >gb|GL376607.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582010, whole genome shotgun sequence Length = 314107 Score = 32.0 bits (71), Expect = 2.8 Identities = 45/227 (19%), Positives = 83/227 (36%), Gaps = 1/227 (0%) Frame = +2 Query: 219 TTLDFPELQGAENNMSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNNPNE 278 T L+ ++ E +M+E KW + + + + R V+ L KG + +++N NE Sbjct: 232061 TCLNMDTIENWEKSMAETHVL-KWSRMFQIRGKLEMYRAVLND---LVKGGVSMESNQNE 232228 Query: 279 SVTANAATNSPSCTRELSWTPMGYVVRQTLS-TELSAAPKNVTSMINLKTIASSADPKNV 337 S + L VV + L+ A + + + + +S P Sbjct: 232229 SAQ-----------QVLQVLKKARVVGRDLTGVSEKIALHSASCQLPQERKDNSVAPSTA 232375 Query: 338 SIPSSEALSSDPSYNKEKHIIHPTQKSKASQGSDLEQNEAXXXXXXXXXXXXXXYEVLTV 397 E + NK++H + AS D E + +++ + Sbjct: 232376 DASMDEVEAGTTGDNKDEHPVG------ASSQHDEETSTVLPSVEDERPEQPDLKDLVQI 232537 Query: 398 QEPPRIEDAEEFPNLAVASERRDRIETPKFQSKQQPQDNFKNNVKKS 444 R E E F ++ RD+++T Q QQ D F+N + S Sbjct: 232538 LTSTRKEIEEIFCTRTRSARVRDKLQTQSIQLSQQTVDLFQNIISMS 232678 >gb|GL376634.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582037, whole genome shotgun sequence Length = 1414051 Score = 31.6 bits (70), Expect = 3.7 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = -1 Query: 720 EQNIPFVFALNRKALGRSLNKAVPVSVVGIFSYDGAQ 756 ++N+P+VF ++ ALGR+ + PV I S D +Q Sbjct: 1376971 DKNVPYVFVPSKVALGRACGVSRPVIAASITSNDASQ 1376861 >gb|GL376615.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582018, whole genome shotgun sequence Length = 689162 Score = 31.6 bits (70), Expect = 3.7 Identities = 25/89 (28%), Positives = 39/89 (43%) Frame = -1 Query: 268 GEIVVKNNPNESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKT 327 G V+ PN S TA A SC+R +W P G T S L++ +L + Sbjct: 617057 GATRVRTVPNGSCTATALMTRCSCSRSSAWGPSG-----TSSCSLTS---------SLPS 616920 Query: 328 IASSADPKNVSIPSSEALSSDPSYNKEKH 356 A++ + + PSS A S++ +H Sbjct: 616919 SAATRRSLSSTRPSSSASGGRSSWSARRH 616833 >gb|GL376613.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875582016, whole genome shotgun sequence Length = 784520 Score = 31.2 bits (69), Expect = 4.8 Identities = 28/106 (26%), Positives = 45/106 (42%) Frame = +1 Query: 493 ERGRRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAV 552 +RGR +SQ++T KK K PKA+KPT ++ E + E+AV Sbjct: 192136 KRGRVVSQVQTSR----------KKQKPVAAPKARKPTKKQQDDESVNAEEHENGDEDAV 192285 Query: 553 SPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDKSE 598 +++ + GG+D + EG + S + ED E Sbjct: 192286 GSDNENENEAAEDEGGED-------AAAGEGGEHDKSKDTAEDDGE 192402 >gb|GL376567.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581354, whole genome shotgun sequence Length = 1199448 Score = 31.2 bits (69), Expect = 4.8 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 5/88 (5%) Frame = -3 Query: 516 KKGKQREIPKAKKPTSL----KKIILKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQ 571 +K +Q++ A SL KK + K++Q++K+++ +N A T+ +DG+ GGD Sbjct: 734656 QKHQQQQQTNAGTSESLSREEKKKLKKKQQKKKKKMNKNGADGA-TAAAGEDGQDGGDAL 734480 Query: 572 FPEQAELS-GPEGMDELISTPSVEDKSE 598 A+L P+ L+S +E S+ Sbjct: 734479 NETMAKLEIAPKQDTILLSNFCIESDSD 734396 >gb|GL376599.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581987, whole genome shotgun sequence Length = 709757 Score = 30.8 bits (68), Expect = 6.3 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +3 Query: 532 LKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGP 581 L+ + LKER+ R+ ++E +S T DG+ G +++ P + + SGP Sbjct: 149256 LRDVDLKERKNRQ--MEEKRKQMRNSSGATGDGDDGIEEEIPGEKQSSGP 149399 >gb|GL376573.1| Pythium ultimum DAOM BR144 unplaced genomic scaffold scf_1117875581402, whole genome shotgun sequence Length = 979788 Score = 30.8 bits (68), Expect = 6.3 Identities = 20/59 (33%), Positives = 29/59 (49%) Frame = -3 Query: 496 RRMSQMKTPHNPLDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSP 554 RRM+Q KTP N L ++ KQR + + P+ K K R ++RLQ + P Sbjct: 333487 RRMNQRKTPKNQLRTAR------KQRRKRRIRSPSR*AKRRSKRRLPARRRLQRRKLPP 333329 Database: P.ultimum/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 42,801,618 Number of sequences in database: 82 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,684,500 Number of Sequences: 82 Number of extensions: 498190 Number of successful extensions: 2915 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 2695 Number of HSP's gapped (non-prelim): 798 length of query: 854 length of database: 14,267,206 effective HSP length: 111 effective length of query: 743 effective length of database: 14,258,104 effective search space: 10593771272 effective search space used: 10593771272 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 66 (30.0 bits)