TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: P.tricornutum/genome.fa 
           31 sequences; 23,733,684 total letters

Searching...............................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    79   9e-15
gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    34   0.41 
gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    33   0.71 
gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome ...    30   7.8  

>gb|CM000605.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 1, whole genome shotgun
               sequence
          Length = 2535400

 Score = 79.3 bits (194), Expect = 9e-15
 Identities = 44/140 (31%), Positives = 75/140 (53%)
 Frame = +2

Query: 630     RDYCSQMLSKEVDACVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLGLREVXXXXXXXXX 689
               R Y + +  + V   +T++  EL+R Q R   ++    K KRRLV+GLREV         
Sbjct: 1285895 RPYATLISDESVKPLLTEMFGELMRLQKRAVDEN--NTKVKRRLVMGLREVARGIRSHKV 1286068

Query: 690     XCVIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALGRSLNKAVPVSVVGI 749
                 V ++ N   +   G +D+ L  I+D A E  +P  +   ++ALG+ + K V ++VVG+
Sbjct: 1286069 KLVAMANN---LDDYGAIDEKLQEILDLADENEVPIFYEFTKRALGKVMGKTVKIAVVGV 1286239

Query: 750     FSYDGAQDQFHKMVELTVAA 769
                + +GA  QF K++ ++  A
Sbjct: 1286240 QNAEGAHQQFKKLLAISTKA 1286299



 Score = 31.2 bits (69), Expect = 2.7
 Identities = 32/130 (24%), Positives = 50/130 (38%)
 Frame = -2

Query: 527    KKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDE 586
              + PT++ +  L     R QRLQ +  +        + GE   D Q    A L   +    
Sbjct: 210954 RSPTAISRAQLSFADTRAQRLQSSVAATCNCLTLPETGEYRSDKQL---AIL*HAQPASF 210784

Query: 587    LISTPSVEDKSEEPPGTELQRDTEASHLAPNHTTFPKIHSRRFRDYCSQMLSKEVDACVT 646
              +  T  + D   +P GT    D    H     +  PK  +   + Y S     E+ A +T
Sbjct: 210783 MTDTAVIHD---DPSGTNNDDDAVTEHGDSGISHLPKKEAPDGKIYFSY---SEIHATIT 210622

Query: 647    DLLKELVRFQ 656
               L+ +L  FQ
Sbjct: 210621 SLVPQLEAFQ 210592



 Score = 30.8 bits (68), Expect = 3.5
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
 Frame = +1

Query: 509     DSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRL---------QENAVSPAFTSD 559
               D    +  KG+QR  P+ KK ++LKK +L+ER  R + L         +  A S      
Sbjct: 1284691 DGKMVVKNKGRQRIRPQKKKFSALKKKVLEERLRRWRDLHPEDSLHSVERKASSLVCIIG 1284870

Query: 560     DTQDGESGGDDQFPE 574
                T + E   DD++ E
Sbjct: 1284871 LTSEDELEDDDEYNE 1284915


>gb|CM000611.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 8, whole genome shotgun
              sequence
          Length = 1007773

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 27/139 (19%)
 Frame = -2

Query: 511    SAPLMKKGKQREIPKAKKPTSLKKIILKE--RQERKQ----RLQENAVSPAFTSDDTQDG 564
              SA L + GK       KKPT LKK I K   ++E K+    + ++ A   + TS   +  
Sbjct: 594090 SANLTEDGKLTNSSVWKKPTPLKKAIKKSIGKKELKKTVGTKRKKEASIDSKTSKKARKK 593911

Query: 565    ESGGDDQFPEQA---------------------ELSGPEGMDELISTPSVEDKSEEPPGT 603
              +SG +++ P  A                     +L G +G   + S  +V  K   P  +
Sbjct: 593910 KSGEEEKKPTTAPAKSKVQKVKVRVEKANPKVEQLQGDDGRSSVDSYSAVHQK-HGPQSS 593734

Query: 604    ELQRDTEASHLAPNHTTFP 622
                Q+     H  P+H  FP
Sbjct: 593733 VHQQSQPPPHWGPSHHNFP 593677


>gb|CM000607.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 4, whole genome shotgun
              sequence
          Length = 1360148

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 759    FHKMVELTVAARQAYK----TMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGPP 810
              FHK+  +  + R  Y+    T+ E+V   LVG P   +PP  P     C    GPP
Sbjct: 170124 FHKVTYILTSYRYVYRPTRSTLFESVGTSLVGIP--SSPPFFPNTPTKCVGVAGPP 170285


>gb|CM000623.1| Phaeodactylum tricornutum CCAP 1055/1 chromosome 21, whole genome shotgun
              sequence
          Length = 662217

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
 Frame = -1

Query: 558    SDDTQDGESGGDDQFPEQAELSGPE------GMDELISTPSVEDKSEEPPGTELQRDTEA 611
              SD TQ     G       A  S  E       +    S  S   +   PP  + + ++ +
Sbjct: 589989 SDSTQSDHEEGHGTPLVSAPFSSSEMRFLTHALQATSSAVSAVTRRRPPPSHQARDESVS 589810

Query: 612    SHLAPNHTTFPKIHSRRFRDYCSQMLSKE 640
              SH AP   T P + S    + C+ + S +
Sbjct: 589809 SHAAPGVATLPILSSSSMAESCAALSSNQ 589723


  Database: P.tricornutum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 23,733,684
  Number of sequences in database:  31
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,746,388
Number of Sequences: 31
Number of extensions: 290347
Number of successful extensions: 1457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1334
Number of HSP's gapped (non-prelim): 302
length of query: 854
length of database: 7,911,228
effective HSP length: 107
effective length of query: 747
effective length of database: 7,907,911
effective search space: 5907209517
effective search space used: 5907209517
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)