TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01001332.1| Hyaloperonospora parasitica strain Emoy2 v-7....    33   2.5  
gb|ABWE01000875.1| Hyaloperonospora parasitica strain Emoy2 v-7....    33   2.5  
gb|ABWE01000108.1| Hyaloperonospora parasitica strain Emoy2 v-7....    32   4.3  
gb|ABWE01000093.1| Hyaloperonospora parasitica strain Emoy2 v-7....    32   5.6  

>gb|ABWE01001332.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont68.2, whole
            genome shotgun sequence
          Length = 15570

 Score = 32.7 bits (73), Expect = 2.5
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 761  KMVELTVAARQAYKTMLENVQQELVGEPRPQAPPSLPTQGPSCPAEDGPPALKEKEEPHY 820
            K  EL V  R   +  +  +         PQAPP+ PT G +  A   PP  +  E  ++
Sbjct: 9835 KEAELPVIGRSLVRVCMSCILSHANSHANPQAPPAAPTSGSAGTATSPPPREEHWEAQNF 10014


>gb|ABWE01000875.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont28.10, whole
             genome shotgun sequence
          Length = 25126

 Score = 32.7 bits (73), Expect = 2.5
 Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
 Frame = -3

Query: 201   KSRIIAKNVSTSKPEFEFTTLDFPELQGAENNMSEIQKQPKWGPVHSVSTDISLLREVVK 260
             K+R+  K V++S    + ++ + P  +         +  PK  PV S S+D S   E   
Sbjct: 20054 KARVAVKPVASSSSSSDSSSDEAPPKKVVAVAKKGSKAAPK-KPVDSSSSDSSSSEEEA- 19881

Query: 261   PAAVLSKGEIVVKNNPNESVTAN-----AATNSPSCTRELSWTPMGYVVRQTLSTELSAA 315
             P  V++K  +  K   ++S +       A+   P+  +E S +          S+    A
Sbjct: 19880 PKKVVTKKPVAKKEETSDSSSDEEEEEAASKKVPAAKKESSDSSSD-------SSSEEEA 19722

Query: 316   PKNVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKEKHIIHPTQKSKASQ 368
             PK V ++ + K +A     K  S  SS   SSD     +K +  PT+K+ A +
Sbjct: 19721 PKKVVAL-SKKVVAK----KEESSDSSSDSSSDEKETSKKVVAPPTKKAVAKK 19578


>gb|ABWE01000108.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont97.8, whole genome
             shotgun sequence
          Length = 80567

 Score = 32.0 bits (71), Expect = 4.3
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = -3

Query: 508   LDSSAPLMKKGKQREIPKAKKPTSLKKIILKERQERKQRLQENAVSPAFTSDDTQD 563
             L  SA +  K K+ ++  AK    LK ++ ++ QERK+RLQE   +    +DD +D
Sbjct: 57147 LTESALVPSKAKEIKVD-AKSLVDLKAVVFQKEQERKRRLQEALTA---KNDDHED 56992


>gb|ABWE01000093.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont160.2, whole
             genome shotgun sequence
          Length = 83599

 Score = 31.6 bits (70), Expect = 5.6
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
 Frame = -3

Query: 542   ERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPE----GMDELISTPSVEDKS 597
             E++++ +E A++ +    D Q+ E    D+  +Q E+   +    G ++L      E + 
Sbjct: 61049 EQQKKQEEEALTASALEGDEQEVEVNSGDEDNDQLEMDADDEVDDGSNDLNDDDEEEGEH 60870

Query: 598   EEPPGTELQRDTEA 611
             EEP     + DTEA
Sbjct: 60869 EEPVSLTPKEDTEA 60828


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,932,471
Number of Sequences: 5422
Number of extensions: 716268
Number of successful extensions: 2922
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 2516
Number of HSP's gapped (non-prelim): 771
length of query: 854
length of database: 22,486,378
effective HSP length: 114
effective length of query: 740
effective length of database: 21,868,270
effective search space: 16182519800
effective search space used: 16182519800
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 68 (30.8 bits)