TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete (854 letters) Database: C.muris/genome.fa 84 sequences; 9,245,251 total letters Searching...................................................................................done Score E Sequences producing significant alignments: (bits) Value gb|DS989732.1| Cryptosporidium muris RN66 scf_1106632373461 geno... 59 6e-09 gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 geno... 33 0.36 gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 geno... 31 1.4 gb|DS989727.1| Cryptosporidium muris RN66 scf_1106632353999 geno... 30 1.8 gb|DS989740.1| Cryptosporidium muris RN66 scf_1106632353993 geno... 28 8.9 >gb|DS989732.1| Cryptosporidium muris RN66 scf_1106632373461 genomic scaffold, whole genome shotgun sequence Length = 567910 Score = 58.5 bits (140), Expect = 6e-09 Identities = 33/109 (30%), Positives = 56/109 (51%) Frame = -2 Query: 671 RRLVLGLREVXXXXXXXXXXCVIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALN 730 R +G+RE +I++P+ E +GGL + I+ A E NIP +FALN Sbjct: 47313 RVFTVGVREAMRCLRHKKLQALIVAPDIEGGDIEGGLRHHVIHILMQAQEFNIPVIFALN 47134 Query: 731 RKALGRSLNKAVPVSVVGIFSYDGAQDQFHKMVELTVAARQAYKTMLEN 779 R +GR++ K + +SV+G+ S G + QF + ++ Y +E+ Sbjct: 47133 RHRIGRAMGKHMRMSVLGLLSTRGVERQFQTVAHTAKVLQRLYNFCIEH 46987 >gb|DS989728.1| Cryptosporidium muris RN66 scf_1106632373407 genomic scaffold, whole genome shotgun sequence Length = 965821 Score = 32.7 bits (73), Expect = 0.36 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 9/127 (7%) Frame = +3 Query: 165 DGTISSEIKSARGSHHLSIYAENSLKSDGYHKRTDRKSRI-----IAKNVSTSKPEFEF- 218 D T+++EIK S S+ S G TD SR + V TSKP+F+ Sbjct: 804351 DWTLNTEIKDTISS---------SIISSGISNATDTSSRKSGGIHMVVGVKTSKPDFDSN 804503 Query: 219 ---TTLDFPELQGAENNMSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVVKNN 275 + L+ ++ A NN S+I + + S + + A + +KG+ V +N Sbjct: 804504 IWKSKLNETKVYSANNN-SDINSNKELNEKNDESNKVKESLKYNIRARLAAKGQKVELSN 804680 Query: 276 PNESVTA 282 P E + A Sbjct: 804681 PQEIIRA 804701 >gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 genomic scaffold, whole genome shotgun sequence Length = 1324930 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%) Frame = +3 Query: 309 STELSAAPKNVTSMINLKTIASSADPKNVSI---PSSEALSSDPSYNKEKHIIHPTQKSK 365 S + S +P N TS+ + + +SS P ++S+ PS+ +LSS S+NK + + S Sbjct: 1221255 SVKESESPSN-TSITSSSSTSSSISPSSISLSIPPSTTSLSSRLSFNKSSYSSSVSSSSS 1221431 Query: 366 AS 367 +S Sbjct: 1221432 SS 1221437 Score = 30.0 bits (66), Expect = 2.3 Identities = 16/62 (25%), Positives = 29/62 (46%) Frame = +1 Query: 181 LSIYAENSLKSDGYHKRTDRKSRIIAKNVSTSKPEFEFTTLDFPELQGAENNMSEIQKQP 240 +S+Y EN++ GY +D S ++ N+ +PE + F ++ E + Q Sbjct: 867958 VSLYPENAIALSGYGVPSDLASTLVLLNLIMKEPEVKIEKEQF--IKDRPTQKKEHELQS 868131 Query: 241 KW 242 KW Sbjct: 868132 KW 868137 Score = 29.3 bits (64), Expect = 4.0 Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 4/99 (4%) Frame = +1 Query: 186 ENSLKSDGYHKRTDRKSR-IIAKNVSTSKPEF--EFTTLDFPELQGAENNMSEIQKQPKW 242 +NS K + + R + ++ ++A+++ + TTLD PE+ +SEIQK + Sbjct: 607855 QNSFKQEDNNLRKELTAKQLLAQSLQEMVEQHISSLTTLDLPEITTKTTILSEIQKNIQQ 608034 Query: 243 GPVHSVSTDISLLR-EVVKPAAVLSKGEIVVKNNPNESV 280 +S + D+ + + + A L K ++ ++N E++ Sbjct: 608035 KSKYSENIDVQYISIDEILEFAKLFKSDLQLENMTIETL 608151 Score = 28.5 bits (62), Expect = 6.8 Identities = 51/238 (21%), Positives = 92/238 (38%), Gaps = 25/238 (10%) Frame = -3 Query: 163 RADGTISSEIKSARGSHHLSIYAENSLKSDGYHKRTDR--------KSRIIAKNVSTSKP 214 RAD + + ++ S Y+ L S G HK T+ I+ +N++ + Sbjct: 520301 RADPDVPLLWNAENRDYYCSGYSRGHLASAGQHKDTEENLSQTFLLSGNIVPQNLANNGS 520122 Query: 215 EFEFTTLDFPELQGAENNMS------EIQKQPKWGPVHSVSTDISLLR---EVVKPAAVL 265 D+ ++ +++ I P + P + S D+ LR V++ Sbjct: 520121 -------DWYRIERLSRHLTYFYDDVYIVSGPLFIPQNMTSADLRKLRTDFNVLESPPKG 519963 Query: 266 SKGEIVVKNNPNESVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMI-- 323 S G+I V + + S T N + R +++ TL ++ AAP ++ +I Sbjct: 519962 SLGQICVLHEDDSSETKNQNYTEYNKVRSVTF--------NTLGDKMVAAPTHLFKVIIA 519807 Query: 324 -----NLKTIASSADPKNVSIP-SSEALSSDPSYNKEKHIIHPTQKSKASQGSDLEQN 375 ++ T S PK IP SS + D S E H T + + G + +N Sbjct: 519806 VNPKSDVLTRGSVKVPKEFEIPKSSNEVVLDLS---ESDTTHGTSNNITANGDNSIEN 519642 >gb|DS989727.1| Cryptosporidium muris RN66 scf_1106632353999 genomic scaffold, whole genome shotgun sequence Length = 1306717 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/55 (30%), Positives = 30/55 (54%) Frame = -3 Query: 318 NVTSMINLKTIASSADPKNVSIPSSEALSSDPSYNKEKHIIHPTQKSKASQGSDL 372 N+T+ N+ IAS AD KN++I S+ ++ + + + + K +Q SDL Sbjct: 56867 NITNTTNINNIASDADIKNITITHSDIKNTTSTRDNKNITNTHSDKVLKNQISDL 56703 >gb|DS989740.1| Cryptosporidium muris RN66 scf_1106632353993 genomic scaffold, whole genome shotgun sequence Length = 196818 Score = 28.1 bits (61), Expect = 8.9 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 1/125 (0%) Frame = -1 Query: 213 KPEFEFTTLDFPELQGAENNMSEIQKQPKWGPVHSVSTDISLLREVVKPAAVLSKGEIVV 272 +PE + P ++NN+SEIQK+ V +++ + + + ++ L E + Sbjct: 20802 EPEIAISAYHTPNKFLSKNNLSEIQKKVLISLVDTLTPNRASIIKLSDEDFSLKSSEEIK 20623 Query: 273 KNNPNE-SVTANAATNSPSCTRELSWTPMGYVVRQTLSTELSAAPKNVTSMINLKTIASS 331 +P + + T SPS EL + LS PKN+ S+INL + Sbjct: 20622 SFDPYDINYTLQDLHISPSSINELE--------SMNIDEILSCVPKNL-SIINLNETSCP 20470 Query: 332 ADPKN 336 + +N Sbjct: 20469 SYQEN 20455 Database: C.muris/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 9,245,251 Number of sequences in database: 84 Lambda K H 0.311 0.128 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,991,107 Number of Sequences: 84 Number of extensions: 70177 Number of successful extensions: 246 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 222 Number of HSP's gapped (non-prelim): 123 length of query: 854 length of database: 3,081,750 effective HSP length: 100 effective length of query: 754 effective length of database: 3,073,350 effective search space: 2317305900 effective search space used: 2317305900 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 61 (28.1 bits)