TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: C.merolae/genome.fa 
           20 sequences; 16,546,747 total letters

Searching....................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, compl...    40   0.003
dbj|AP006483.2| Cyanidioschyzon merolae DNA, chromosome 1, compl...    30   4.2  
dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, comp...    29   7.1  

>dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, complete genome, complete
              sequence
          Length = 528682

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 10/167 (5%)
 Frame = +2

Query: 619    TTFPKIHSRRFRDYCSQMLSKEVDA--CVTDLLKELVRFQDRMYQKDPVKAKTKRRLVLG 676
              TT+P+   RRF        S+ +     V  LL++L++FQ R+ +    K +  +R V G
Sbjct: 111533 TTYPE---RRFPGLLPTENSQSLGTVTAVKQLLRKLIKFQARLARDQSRKLRAHKRYVCG 111703

Query: 677    LREVXXXXXXXXXXCVIISPNCEKIQSKGGLDDTLHTIIDYACEQNIPFVFALNRKALGR 736
              +RE            +I+  N     +   L +TL      A E ++P +  ++   L R
Sbjct: 111704 IRECTRLLRAKQCLLLIVPSNGILPCAAANLQETL----ALAEEHSVPIIRDISATELCR 111871

Query: 737    SLNK-------AVPVSVVGIFSYDGAQDQFHKMVE-LTVAARQAYKT 775
               L +       A P   VG+ S +GA  +  ++ + L + A   Y T
Sbjct: 111872 LLRRVQASRLNARPACCVGVKSCEGASLEMQRVFDALALQAGNIYPT 112012


>dbj|AP006483.2| Cyanidioschyzon merolae DNA, chromosome 1, complete genome, complete
              sequence
          Length = 422616

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +2

Query: 1      MASEGPREPESEGIKLSADVKPFVPR 26
              M S+ PR+P S G  LSA V PF PR
Sbjct: 170735 MHSQTPRQPFSTGRLLSALVSPFTPR 170812


>dbj|AP006492.2| Cyanidioschyzon merolae DNA, chromosome 10, complete genome, complete
              sequence
          Length = 839707

 Score = 29.3 bits (64), Expect = 7.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 597    SEEPPGTELQRDTEASHLAPNHTTFPKIHSRRFR 630
              S  P G  L  D+E+SH+  +H      H R FR
Sbjct: 282879 SRIPDGNRLHSDSESSHVVVDHQPHYFFHERHFR 282980


  Database: C.merolae/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 16,546,747
  Number of sequences in database:  20
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,662,117
Number of Sequences: 20
Number of extensions: 204678
Number of successful extensions: 992
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 971
Number of HSP's gapped (non-prelim): 30
length of query: 854
length of database: 5,515,582
effective HSP length: 104
effective length of query: 750
effective length of database: 5,513,502
effective search space: 4135126500
effective search space used: 4135126500
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)