TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) #
Homo sapiens # Complete
         (854 letters)

Database: A.taiwanensis/genome.fa 
           5379 sequences; 6,149,411 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABJQ01002154.1| Ascogregarina taiwanensis Contig2440, whole g...    31   0.53 
gb|ABJQ01001629.1| Ascogregarina taiwanensis Contig1862, whole g...    29   2.0  
gb|ABJQ01003369.1| Ascogregarina taiwanensis Contig3709, whole g...    29   2.6  
gb|ABJQ01002663.1| Ascogregarina taiwanensis Contig2972, whole g...    29   2.6  
gb|ABJQ01003929.1| Ascogregarina taiwanensis CLRanP129-B05.b1.ab...    27   7.7  
gb|ABJQ01003428.1| Ascogregarina taiwanensis Contig3771, whole g...    27   7.7  
gb|ABJQ01003189.1| Ascogregarina taiwanensis Contig3523, whole g...    27   7.7  

>gb|ABJQ01002154.1| Ascogregarina taiwanensis Contig2440, whole genome shotgun sequence
          Length = 761

 Score = 31.2 bits (69), Expect = 0.53
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = +3

Query: 785 VGEPRPQAP-----PSLPTQGPSCPAEDGP-PALKEKEEPHYI 821
           VG P P  P     P++PT  P+ P+  GP PA      PH +
Sbjct: 30  VGRPHPPPPSPRSLPTVPTPTPTVPSHRGPVPAAHHPHHPHLL 158


>gb|ABJQ01001629.1| Ascogregarina taiwanensis Contig1862, whole genome shotgun sequence
          Length = 767

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
 Frame = +2

Query: 537 LKERQERKQRLQENAVSPAFTSDDTQDGESGGDDQFPEQAELSGPEGMDELISTPSVEDK 596
           + E     + +   A++PA +      G + GDD +   + L+G    + +  +P  +  
Sbjct: 431 ISESVYESEHVFSRAINPAAS------GSNWGDDLYDTNSNLAGVSASELISDSPGTKTL 592

Query: 597 SEEP------PGTELQRDTEASHLAPNHT 619
           SEE       P T +      S L+ NH+
Sbjct: 593 SEEKLSFPEIPNTMMTSQAMDSRLSQNHS 679


>gb|ABJQ01003369.1| Ascogregarina taiwanensis Contig3709, whole genome shotgun sequence
          Length = 656

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 786 GEPRPQAPPSLPTQGPS 802
           G PRP+ PP  PT+GPS
Sbjct: 403 GWPRPRTPPPPPTRGPS 353


>gb|ABJQ01002663.1| Ascogregarina taiwanensis Contig2972, whole genome shotgun sequence
          Length = 729

 Score = 28.9 bits (63), Expect = 2.6
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = -2

Query: 793 PPSLPTQGP--SC---PAEDGPPALKEKEEPHYIEIWKKHLEAYSGC 834
           PPSLP  G   +C   PA  GP     +E     E W + L A +GC
Sbjct: 470 PPSLPPHGQPRACGGGPARPGPLPTGARESMGGGEAWPRWLRARAGC 330


>gb|ABJQ01003929.1| Ascogregarina taiwanensis CLRanP129-B05.b1.ab1, whole genome
           shotgun sequence
          Length = 799

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +2

Query: 735 GRSLNKAVPVSVVGIFSYDGAQDQFHKMVELTVAARQAYK--TMLENVQQELVGEPRPQA 792
           G S +   P S+V     DG   Q  + V+      +  K  + + +V    V      A
Sbjct: 227 GHSDSARTPASIV-----DGLASQSARKVKKKTKEGRKTKNSSAVSSVVSSNVTPASSSA 391

Query: 793 PPSLPTQGPSCPAEDGPPA 811
           PP  P++ P+   ED PPA
Sbjct: 392 PPLAPSELPTLTLEDPPPA 448


>gb|ABJQ01003428.1| Ascogregarina taiwanensis Contig3771, whole genome shotgun sequence
          Length = 2833

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 788  PRPQAPPSLPTQGPSCPAEDGPPALKEKEEPH 819
            PR    P+  T GP  P   GPPA++    PH
Sbjct: 1898 PRRSCGPA--THGPGPPPARGPPAVRRTAGPH 1987


>gb|ABJQ01003189.1| Ascogregarina taiwanensis Contig3523, whole genome shotgun sequence
          Length = 820

 Score = 27.3 bits (59), Expect = 7.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 788 PRPQAPPSLPTQGPSCPAEDGPPALKEKEEPH 819
           PR    P+  T GP  P   GPPA++    PH
Sbjct: 498 PRRSCGPA--THGPGPPPARGPPAVRRTAGPH 409


  Database: A.taiwanensis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 6,149,411
  Number of sequences in database:  5379
  
Lambda     K      H
   0.311    0.128    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,346,496
Number of Sequences: 5379
Number of extensions: 71504
Number of successful extensions: 435
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of query: 854
length of database: 2,049,803
effective HSP length: 95
effective length of query: 759
effective length of database: 1,538,798
effective search space: 1167947682
effective search space used: 1167947682
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)