TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|116242735|sp|Q8IV42.2|PSTK_HUMAN RecName: Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec) kinase (348 letters) Database: T.trahens/genome.fa 131 sequences; 28,680,627 total letters Searching.................................................................done Score E Sequences producing significant alignments: (bits) Value gb|GL349471.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 35 0.075 gb|GL349460.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 32 0.82 gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 31 1.4 gb|GL349454.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 30 1.8 gb|GL349438.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 30 1.8 gb|GL349485.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 30 3.1 gb|GL349463.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 30 3.1 gb|GL349488.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 29 4.1 gb|GL349465.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 29 4.1 gb|GL349475.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 29 5.3 gb|GL349437.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 7.0 gb|GL349492.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 9.1 gb|GL349473.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 9.1 gb|GL349468.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 9.1 gb|GL349458.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 9.1 gb|GL349448.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 9.1 gb|GL349436.1| Thecamonas trahens ATCC 50062 unplaced genomic sc... 28 9.1 >gb|GL349471.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.39, whole genome shotgun sequence Length = 339809 Score = 35.0 bits (79), Expect = 0.075 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 5/86 (5%) Frame = +3 Query: 65 AGARARPAPSQWKLLRQELL-----KYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLK 119 + AR RPAP+ LR+ L + + F +I C+ S PP + EDF L Sbjct: 274593 SSARPRPAPTDDTELRRSSLAVAARRSISRFRSRIILACRFSCPPPPAAGVREDFFPPL- 274769 Query: 120 DQDLIFSAAFEAQSCYLLTKTAVSRP 145 L+ + A + +L + TA S P Sbjct: 274770 -SPLLAAPALDLFLVFLFSATATSAP 274844 >gb|GL349460.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.28, whole genome shotgun sequence Length = 422706 Score = 31.6 bits (70), Expect = 0.82 Identities = 18/37 (48%), Positives = 21/37 (56%) Frame = -2 Query: 9 GTGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQE 45 G G+ GP RGL V + AG TFARAL L Q+ Sbjct: 99158 GRGTPGPDARGLAVAVAV-RAGAGTFARALQDPLDQD 99051 Score = 30.8 bits (68), Expect = 1.4 Identities = 72/305 (23%), Positives = 100/305 (32%), Gaps = 30/305 (9%) Frame = -3 Query: 15 PRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMPDAFLAGARARP--- 71 P + LC++ GLPA GKST A A+A G V+ D V +A A A + Sbjct: 317632 PTRLVLCMV-GLPAVGKSTLAAAVA----DAHGGV--VIDVDAVYANALDADASSGGCGT 317474 Query: 72 ---APSQWKLLRQELLKYLEYFLMAVINGCQMSVPPNRTEAMWEDFITCLKDQDLIFSAA 128 AP W+ R E L L +A D D Sbjct: 317473 DGFAPELWRAARAEALDGLLAEALAA-------------------------DPD------ 317387 Query: 129 FEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEV----------YQLARKYSLGFCQLF 178 P +++DDN YY SMR +V + A LG+ L Sbjct: 317386 --------------DGPRLVIVDDNAYYASMRRDVARRVAEAAERHNDALVLGLGYLYLA 317249 Query: 179 LDCPLETCLQRNGQRP--QALPPETIHLMGRKLEKPNPEKNAWEHNSL-TIP-------- 227 L+ N R +P + M + E P A H +L T+P Sbjct: 317248 AGDTLDDAAAANAARTGLARVPDAVVATMAARFEPPT---TAETHGALITLPMHPNVDDP 317078 Query: 228 ---SPACASEASLEVTDLLLTALENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIV 284 +P AS V L LT AE + + N+ H+ D RR Sbjct: 317077 ALTAPLVEWLASPPVASLPLTVDGRAAAEAE-AAAAAAAAAAVTAANLAHQADLASRRAF 316901 Query: 285 SQTMK 289 + M+ Sbjct: 316900 TAVMR 316886 >gb|GL349444.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.12, whole genome shotgun sequence Length = 562821 Score = 30.8 bits (68), Expect = 1.4 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 7/87 (8%) Frame = -1 Query: 202 IHLMGRKLEKPNPEKNAWE-------HNSLTIPSPACASEASLEVTDLLLTALENPVKYA 254 +HL GR+ +P P W ++PSPAC SL +L +P Sbjct: 399099 LHLDGRRWLRPRPVARTWHPRHRRELWTGPSMPSPACTRSTSLPTRIASRMSLAHPRPCR 398920 Query: 255 EDNMEQKDTDRIICSTNILHKTDQTLR 281 + R++C++ H Q R Sbjct: 398919 RASPLPSTRPRLLCASRSGHSFWQMTR 398839 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = -1 Query: 189 RNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHN 222 R+ QR Q++PP HL RKL+ P E+ W+ + Sbjct: 16203 RHNQRRQSVPPRG-HLAARKLDLPLDEEGEWDEH 16105 >gb|GL349454.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.22, whole genome shotgun sequence Length = 456871 Score = 30.4 bits (67), Expect = 1.8 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%) Frame = -1 Query: 167 ARKYSLGFCQLFLD--CPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSL 224 AR+ + G C+ +D PL + Q + +P PP H M + HNS Sbjct: 380083 AREQAAGACKYGVDQESPLPSIAQSSRAKPAIAPPPQHHAMSSPAQPRPDHHQQIHHNSK 379904 Query: 225 TIPSP 229 + P P Sbjct: 379903 SCPPP 379889 >gb|GL349438.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.6, whole genome shotgun sequence Length = 631277 Score = 30.4 bits (67), Expect = 1.8 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 22 VLCGLPAAGKSTFARALAHRLQQEQGW 48 V+CGLP +GKS ARA+ W Sbjct: 291194 VVCGLPGSGKSELARAIGRASHSNVAW 291274 >gb|GL349485.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.53, whole genome shotgun sequence Length = 297564 Score = 29.6 bits (65), Expect = 3.1 Identities = 19/57 (33%), Positives = 27/57 (47%) Frame = +3 Query: 200 ETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVTDLLLTALENPVKYAED 256 + IH+ R P E+NA E L P+ E EV D + A +P+K A+D Sbjct: 156591 QAIHVAKRVESHPADERNAVERTLLVAFLPSVEREVKTEVLDEVFGA--SPIKAADD 156755 >gb|GL349463.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.31, whole genome shotgun sequence Length = 395032 Score = 29.6 bits (65), Expect = 3.1 Identities = 20/63 (31%), Positives = 30/63 (47%) Frame = -3 Query: 22 VLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMPDAFLAGARARPAPSQWKLLRQ 81 +LCG P AGKST A +LA R +G D++ G + APS L + Sbjct: 348125 LLCGPPLAGKSTVAASLAARYPHLTTLDLG-----DLLTQLLTDGVQDAQAPSPRAPLTE 347961 Query: 82 ELL 84 +++ Sbjct: 347960 DIV 347952 >gb|GL349488.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.56, whole genome shotgun sequence Length = 238995 Score = 29.3 bits (64), Expect = 4.1 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 6/57 (10%) Frame = +2 Query: 181 CPLETCLQRNGQRPQALPPETIHLMGRKLEKP------NPEKNAWEHNSLTIPSPAC 231 CPL T R+ RP+ P H GR +P P + + T P PAC Sbjct: 142637 CPLATDANRSHARPRPRRPC*RHPPGRPRRRPPPRLAAGPARGSGPRRPATAPRPAC 142807 Score = 28.1 bits (61), Expect = 9.1 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -2 Query: 187 LQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSL 224 L R G RP+A PPE L+G +P + W + L Sbjct: 215210 LARRGPRPRARPPE---LLGSCSRRPRRRRRHWTQSDL 215106 >gb|GL349465.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.33, whole genome shotgun sequence Length = 407772 Score = 29.3 bits (64), Expect = 4.1 Identities = 20/65 (30%), Positives = 25/65 (38%) Frame = -1 Query: 10 TGSDGPRKRGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMPDAFLAGARA 69 + S R+R LCGLPAA L+ RL P +FL R+ Sbjct: 199245 SASSSARRRSTMTLCGLPAARSFALRALLSRRL---------------ATPRSFLTRTRS 199111 Query: 70 RPAPS 74 PA S Sbjct: 199110 APAGS 199096 >gb|GL349475.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.43, whole genome shotgun sequence Length = 324729 Score = 28.9 bits (63), Expect = 5.3 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = -3 Query: 164 YQLARKYSLGFCQLFLDCPLETCLQRNGQRPQALPPETIHLMGRKL 209 +QL + LG QL + PL+ C+Q + P+ ++L+GRKL Sbjct: 142681 HQLVQLAQLGLAQLAVADPLDRCMQLGKRCPRL----RVNLVGRKL 142556 >gb|GL349437.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.5, whole genome shotgun sequence Length = 654703 Score = 28.5 bits (62), Expect = 7.0 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Frame = -1 Query: 181 CPLETCLQRNGQRPQALPPE-TIHLMGRKLEKPNPEKNAWEHNSLTIPSPAC 231 CPL C R G+ + LPP + ++GR+ P H L P C Sbjct: 241357 CPLSGCCPRRGRPARLLPPPLVVRILGRR-----PAARLSHHPCLRRPQGPC 241217 >gb|GL349492.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.60, whole genome shotgun sequence Length = 221318 Score = 28.1 bits (61), Expect = 9.1 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +1 Query: 182 PLETCLQRNGQRPQALPPETIHLMGRKLEKP 212 P ET RNG+RP+ P ET+ GR +P Sbjct: 137530 PAETVAGRNGRRPKRSPAETV--AGRNGRRP 137616 >gb|GL349473.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.41, whole genome shotgun sequence Length = 350512 Score = 28.1 bits (61), Expect = 9.1 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Frame = +1 Query: 2 KTAENIRGTGSDGPRK--RGLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDD 57 K+A+ + G DGP GL VL + AGK A A + + ++G + V +DD Sbjct: 339052 KSADGEKVKGGDGPEGPGEGLDVLGAVGLAGKPRAAAAAENEREVDKGVDLQDVGHDD 339225 >gb|GL349468.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.36, whole genome shotgun sequence Length = 367059 Score = 28.1 bits (61), Expect = 9.1 Identities = 13/42 (30%), Positives = 19/42 (45%) Frame = -1 Query: 184 ETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLT 225 +TC + G+R PP G L +P+P A N+ T Sbjct: 217605 QTCTPK*GRRAHGSPPAAWSCRGTALSRPHPPTTARHANACT 217480 >gb|GL349458.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.26, whole genome shotgun sequence Length = 436025 Score = 28.1 bits (61), Expect = 9.1 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = -2 Query: 194 PQALPPETIHLMGRKLEKPNP--EKNAWEHNSLTIPSP 229 P LPP ++ +G+++++P+P + S T PSP Sbjct: 286957 PPPLPPSSVGRVGKEVDRPSPASASSTTSTTSATAPSP 286844 >gb|GL349448.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.16, whole genome shotgun sequence Length = 538444 Score = 28.1 bits (61), Expect = 9.1 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = -2 Query: 209 LEKPNPEKNAWEHNSLTIPSPACASEASLEVTDLLLTAL 247 LE P + AW ++T +P CA + L V + L L Sbjct: 397749 LESPTSSRTAWPR*AMTPNTPCCAVDGKLMVANSSLLTL 397633 >gb|GL349436.1| Thecamonas trahens ATCC 50062 unplaced genomic scaffold supercont1.4, whole genome shotgun sequence Length = 664084 Score = 28.1 bits (61), Expect = 9.1 Identities = 17/75 (22%), Positives = 36/75 (48%) Frame = -3 Query: 254 AEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEAKGNQEAFSEMTFKQRWVRANHA 313 AE +++ + + ++ S +LH+ + R+ Q +EAKG + Q +H Sbjct: 506003 AERSLDLRIKELVVVSLVMLHELAKRAARVREQ--REAKGKVAGVERVAALQPLAELDHQ 505830 Query: 314 AIWRIILGNEHIKCR 328 + ++LG+E + R Sbjct: 505829 RLLVLVLGHEREQVR 505785 Database: T.trahens/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 28,680,627 Number of sequences in database: 131 Lambda K H 0.321 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 17,986,788 Number of Sequences: 131 Number of extensions: 412047 Number of successful extensions: 2595 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 33 Number of HSP's that attempted gapping in prelim test: 2296 Number of HSP's gapped (non-prelim): 995 length of query: 348 length of database: 9,560,209 effective HSP length: 100 effective length of query: 248 effective length of database: 9,547,109 effective search space: 2367683032 effective search space used: 2367683032 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 61 (28.1 bits)