TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116242735|sp|Q8IV42.2|PSTK_HUMAN RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase
         (348 letters)

Database: H.arabidopsidis/genome.fa 
           5422 sequences; 67,459,135 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABWE01001406.1| Hyaloperonospora parasitica strain Emoy2 v-7....    31   3.1  
gb|ABWE01000083.1| Hyaloperonospora parasitica strain Emoy2 v-7....    30   4.1  
gb|ABWE01002537.1| Hyaloperonospora parasitica strain Emoy2 v-7....    30   5.4  
gb|ABWE01001049.1| Hyaloperonospora parasitica strain Emoy2 v-7....    30   5.4  
gb|ABWE01000003.1| Hyaloperonospora parasitica strain Emoy2 v-7....    30   7.0  
gb|ABWE01000153.1| Hyaloperonospora parasitica strain Emoy2 v-7....    29   9.2  

>gb|ABWE01001406.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont190.3, whole
             genome shotgun sequence
          Length = 14270

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
 Frame = +2

Query: 20    LCVLCGLPAAGKSTFARAL------AHRLQQEQGWAIGVVAYDDVMPDAFLAGARARPA- 72
             L ++CGLPAAGK+T  + L      + RL +        ++ DD+     +    ++PA 
Sbjct: 10736 LVLVCGLPAAGKTTLVKQLVASGNTSSRLYER-------LSLDDLYEQQAIDDGISKPAE 10894

Query: 73    --PSQWKLLRQELL 84
               P+ WK  + E++
Sbjct: 10895 FDPNIWKASQHEMV 10936


>gb|ABWE01000083.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont159.8, whole
             genome shotgun sequence
          Length = 88009

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 190   NGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACAS 233
             NG+R Q +  +    + RK  +  P K  W  +S   P P+C S
Sbjct: 62184 NGERIQKVTSKVERCLNRKTYQVCPVKRTWFPSSRVFPGPSCLS 62053


>gb|ABWE01002537.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont1188.2, whole
            genome shotgun sequence
          Length = 2988

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 304  KQRWVRANHAAIWRIILGNEHIKCRSAKVGWLQ 336
            +QRW+++ H  +W+  L +E     SA   WLQ
Sbjct: 2667 EQRWLKSQHGFLWQQALASELAGKNSAASRWLQ 2569


>gb|ABWE01001049.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont100.12, whole
             genome shotgun sequence
          Length = 20778

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = -2

Query: 184   ETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACASEASLEVTDLL 243
             E+ LQ +   P A P ETIH+     + P+        + L +PSP C + A  ++ +LL
Sbjct: 11990 ESALQASSPTP-APPLETIHVFYMTGDGPSS-------HPLQVPSPPCYASAITQLPELL 11835

Query: 244   LTALENPVK 252
             L  +   +K
Sbjct: 11834 LDEMLRALK 11808


>gb|ABWE01000003.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont14.19, whole
            genome shotgun sequence
          Length = 194456

 Score = 29.6 bits (65), Expect = 7.0
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
 Frame = -1

Query: 189  RNGQRPQALPPETI---HLMGRKLEKPNPEKNAWEHNSLTIPS---PACASEASL 237
            R+ +  + LPP+     H      EK +P   AW H ++ +PS    ACAS  S+
Sbjct: 2399 RSKRAARWLPPQNALGSHCKANSDEKESPSTCAWRHQTVLLPSISDIACASVGSV 2235


>gb|ABWE01000153.1| Hyaloperonospora parasitica strain Emoy2 v-7.0.1_Cont76.8, whole
            genome shotgun sequence
          Length = 69636

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
 Frame = -3

Query: 231  CASEASLEVTD----LLLTALENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQ 286
            CA + ++   +     +LT  ++ +  + D    +DT     S N    +      +V  
Sbjct: 6958 CAPKRAISTVEPDGCAILTVYKSNLAASSDASRVEDTKATALSRNERTMSSVKKEEVVGG 6779

Query: 287  TMKEAKGNQEAFSEMTFKQRWVRANHAAIWRIILGNEHIKC 327
             ++ A   +E  SEMT ++RW R    A+  +      +KC
Sbjct: 6778 EVELALRVKEMNSEMTSEERWSRRRGFAVATVTAKLAAVKC 6656


  Database: H.arabidopsidis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 67,459,135
  Number of sequences in database:  5422
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,495,285
Number of Sequences: 5422
Number of extensions: 497181
Number of successful extensions: 2585
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 1830
Number of HSP's gapped (non-prelim): 1165
length of query: 348
length of database: 22,486,378
effective HSP length: 106
effective length of query: 242
effective length of database: 21,911,646
effective search space: 5302618332
effective search space used: 5302618332
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)