TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116242735|sp|Q8IV42.2|PSTK_HUMAN RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase
         (348 letters)

Database: C.parvum/genome.fa 
           8 sequences; 9,102,324 total letters

Searching........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whol...    29   1.8  
gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whol...    28   3.0  

>gb|CM000433.1| Cryptosporidium parvum Iowa II chromosome 5, whole genome shotgun
              sequence
          Length = 1080900

 Score = 28.9 bits (63), Expect = 1.8
 Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
 Frame = -1

Query: 113    DFITCLKDQDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSL 172
              DFI    +  + +       + Y+     +    F+     FY  S+R +V  L R+  L
Sbjct: 250965 DFIASSLESAMSWVVTIGRYATYIQRSVGLFTYNFIQTKQEFYSVSLRMKVMHLCRQKEL 250786

Query: 173    GFCQLFLDCPLETCLQRNGQ--RPQALPPETIHLMGRKLEKPNPE 215
                 QL++     +CL +N Q  R QA      ++M R   K  P+
Sbjct: 250785 NISQLYIIAIHTSCL-KNPQLIRNQAAWNNLKNIMRRITNKKFPK 250654


>gb|CM000430.1| Cryptosporidium parvum Iowa II chromosome 2, whole genome shotgun
              sequence
          Length = 985969

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = -3

Query: 202    IHLMGRKLEKPNPEKNAWEHN-----SLTIPSPACASEASLEVTDLLLTALENPVKYAED 256
              +   G  +  PN  K  ++HN     S  I SP+  ++  ++  D+         +   +
Sbjct: 456287 LSFFGLSMNSPNTSKKLYQHNNCYNSSHKICSPSLLADTFIQAADIARNYQSEHYRGIHN 456108

Query: 257    NMEQKDTDRIICS-TNILHKTDQT 279
              N + ++++ +I S TN L K  +T
Sbjct: 456107 NSQLQNSNILIGSNTNTLAKAAET 456036


  Database: C.parvum/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,102,324
  Number of sequences in database:  8
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,392,471
Number of Sequences: 8
Number of extensions: 48918
Number of successful extensions: 208
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 205
Number of HSP's gapped (non-prelim): 35
length of query: 348
length of database: 3,034,108
effective HSP length: 92
effective length of query: 256
effective length of database: 3,033,372
effective search space: 776543232
effective search space used: 776543232
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)