TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116242735|sp|Q8IV42.2|PSTK_HUMAN RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase
         (348 letters)

Database: C.muris/genome.fa 
           84 sequences; 9,245,251 total letters

Searching...................................................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DS989737.1| Cryptosporidium muris RN66 scf_1106632373469 geno...    28   2.3  
gb|DS989731.1| Cryptosporidium muris RN66 scf_1106632373451 geno...    27   8.8  
gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 geno...    27   8.8  

>gb|DS989737.1| Cryptosporidium muris RN66 scf_1106632373469 genomic scaffold, whole
              genome shotgun sequence
          Length = 304527

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
 Frame = +1

Query: 116    TCLKDQDLIFSAAFEAQSCYLLTK------TAVSRPLFLVLDDNFYYQSMRYEVYQLARK 169
              T L D+DLI    ++   CY+ +       T   + +  +L+ N Y     +E ++L R 
Sbjct: 291103 TILNDRDLILVVIYQGIYCYISSSYIDKILTMSKKQILKILNTN-YNNHDNHEYFELFRS 291279

Query: 170    YSLGFCQLFLDCPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLT 225
                  F ++   C L+        + ++L     + + + +     ++  W H  +T
Sbjct: 291280 ---KFDEIIYFCDLQYM-----TKSKSLDESNNYELNKNISNKGKKERQWNHQKIT 291423


>gb|DS989731.1| Cryptosporidium muris RN66 scf_1106632373451 genomic scaffold, whole
             genome shotgun sequence
          Length = 589013

 Score = 26.6 bits (57), Expect = 8.8
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -1

Query: 237   LEVTDLLLTALENPVKYAEDNMEQKDTDRIICSTNILHKTDQTLRRIVSQTMKEAKGNQE 296
             LE+ +  +  L + +KY + N  + + +R I STNI    +     ++  T   A  N  
Sbjct: 33566 LEIYENDINILFSKIKYEDLNNIKSENNRFISSTNINVLLNLFNPCMILLTKILALNNNN 33387

Query: 297   AF-SEMTFKQRWVRANHAAIWRIILG 321
             +F S +   +++ + N    WR   G
Sbjct: 33386 SFTSNLLQDEKYFKYNKMNFWRFPQG 33309


>gb|DS989726.1| Cryptosporidium muris RN66 scf_1106632373453 genomic scaffold, whole
              genome shotgun sequence
          Length = 1324930

 Score = 26.6 bits (57), Expect = 8.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 143    SRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFC 175
              S  L + L+ N YY S  Y  YQ+     L +C
Sbjct: 474611 SNSLHISLNSNLYYYSYNY*YYQIENYLKLLYC 474513


  Database: C.muris/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 9,245,251
  Number of sequences in database:  84
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,344,704
Number of Sequences: 84
Number of extensions: 46360
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 93
length of query: 348
length of database: 3,081,750
effective HSP length: 93
effective length of query: 255
effective length of database: 3,073,938
effective search space: 783854190
effective search space used: 783854190
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)