TBLASTN 2.2.13 [Nov-27-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|116242735|sp|Q8IV42.2|PSTK_HUMAN RecName: Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec) kinase (348 letters) Database: C.merolae/genome.fa 20 sequences; 16,546,747 total letters Searching....................done Score E Sequences producing significant alignments: (bits) Value dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, comp... 31 0.63 dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, compl... 30 1.8 dbj|AP006483.2| Cyanidioschyzon merolae DNA, chromosome 1, compl... 29 3.1 dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, comp... 29 3.1 dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, comp... 28 4.1 dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, comp... 28 4.1 dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, comp... 28 4.1 dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, comp... 28 4.1 dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, compl... 27 9.1 dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, comp... 27 9.1 >dbj|AP006500.2| Cyanidioschyzon merolae DNA, chromosome 18, complete genome, complete sequence Length = 1253087 Score = 31.2 bits (69), Expect = 0.63 Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = +1 Query: 15 PRKR-GLCVLCGLPAAGKSTFARALAHRLQQEQGWAIGVVAYDDVMPDAFLAGARAR 70 P KR GLCV+CGL K R A R Q G AI V + + AGA R Sbjct: 281824 PEKRFGLCVVCGLEITWKGKV*RCRARRGQARSGQAIVCV----IDASRYCAGAENR 281982 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/55 (34%), Positives = 24/55 (43%) Frame = +3 Query: 179 LDCPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWEHNSLTIPSPACAS 233 LD P+ + N Q PP+ HL R K AW+H +I SPA S Sbjct: 621378 LDFPVSSVCMENCQEFGIHPPQQAHLGERASALRT--KGAWKHRYFSIRSPAWIS 621536 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +3 Query: 22 VLCGLPAAGKSTFARALA 39 VLCGLP AGKS A+ +A Sbjct: 834846 VLCGLPRAGKSALAKRIA 834899 >dbj|AP006487.2| Cyanidioschyzon merolae DNA, chromosome 5, complete genome, complete sequence Length = 528682 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Frame = -2 Query: 321 GNEHIKCRSAKVGWL--QCCRIEKRP 344 GN+H +CRS GWL C R+ + P Sbjct: 392439 GNQHCQCRSGASGWLCTSCSRVGEPP 392362 >dbj|AP006483.2| Cyanidioschyzon merolae DNA, chromosome 1, complete genome, complete sequence Length = 422616 Score = 28.9 bits (63), Expect = 3.1 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Frame = +3 Query: 119 KDQDLIFSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFC-QL 177 +D DL+F +A+ Y T + R + + R+ + + R G C L Sbjct: 21354 RDLDLVFRQVHDAKMRYTRTVSICRRTTRMSGEFR-----ERFPIGNIKR*RVAGSCASL 21518 Query: 178 FLDCPLETCLQRNGQRPQALPPETIHL 204 L C L TC+Q R AL P T HL Sbjct: 21519 SLSCILRTCIQSLLFREAALCP*TRHL 21599 >dbj|AP006494.2| Cyanidioschyzon merolae DNA, chromosome 12, complete genome, complete sequence Length = 859119 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -2 Query: 15 PRKRGLCVLCGLPAAGKSTFARAL 38 P G+ +CGLP AGK++ AL Sbjct: 803960 PANEGILAVCGLPGAGKTSLVGAL 803889 >dbj|AP006493.2| Cyanidioschyzon merolae DNA, chromosome 11, complete genome, complete sequence Length = 852849 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -3 Query: 181 CPLETCLQRNGQRPQALPPETI 202 C LE+CL+ R QA+PP+T+ Sbjct: 699985 CTLESCLRPVRDRDQAVPPQTL 699920 >dbj|AP006497.2| Cyanidioschyzon merolae DNA, chromosome 15, complete genome, complete sequence Length = 902900 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/15 (66%), Positives = 14/15 (93%) Frame = -1 Query: 22 VLCGLPAAGKSTFAR 36 +LCG+P +GKSTFA+ Sbjct: 69623 LLCGIPGSGKSTFAK 69579 Score = 27.7 bits (60), Expect = 7.0 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 13/98 (13%) Frame = -2 Query: 216 KNAWEHNSLTIPSPACASEASLEVTDLLLTALENPVKYAEDNME-------------QKD 262 +N W + LT A E+ LLLTA+EN V + + E Q + Sbjct: 761395 RNVWSYGELTA---ALGIRERSELVSLLLTAIENGVICGQIDSEREVFTVHGVEASAQVE 761225 Query: 263 TDRIICSTNILHKTDQTLRRIVSQTMKEAKGNQEAFSE 300 T+ + L +Q +RR+ S +++AK ++E Sbjct: 761224 TEEVQLFLQRLDAWEQRIRRVRS-AIQDAKQRCREYAE 761114 >dbj|AP006501.2| Cyanidioschyzon merolae DNA, chromosome 19, complete genome, complete sequence Length = 1282939 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/28 (50%), Positives = 21/28 (75%) Frame = -2 Query: 83 LLKYLEYFLMAVINGCQMSVPPNRTEAM 110 L++++EY L + NGCQ+SVP +R AM Sbjct: 800673 LVEFMEY-LPSHNNGCQVSVPQDRAMAM 800593 >dbj|AP006502.2| Cyanidioschyzon merolae DNA, chromosome 20, complete genome, complete sequence Length = 1621617 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Frame = -1 Query: 307 WVRANHAA--IWRIILGNEHIKCRSAKVGWLQCCRIEKRPLSTG 348 W R N + I + +G H SAK L C +E+RP++ G Sbjct: 387630 WARVNESRLRIPGLRIGTAHDSVPSAKRSTLACSAVEERPITRG 387499 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%) Frame = +1 Query: 176 QLFLDCPLET-CLQRNGQRPQALPPETI 202 Q+ + PLE C+ R Q+PQ L PET+ Sbjct: 160495 QIAVGAPLEAMCVVRKTQKPQLLDPETL 160578 >dbj|AP006491.2| Cyanidioschyzon merolae DNA, chromosome 9, complete genome, complete sequence Length = 810151 Score = 27.3 bits (59), Expect = 9.1 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%) Frame = +2 Query: 187 LQRNGQRPQALPPETIHLMG----RKLEKPNPEKNAWEHNSL 224 L R G P+ LPP+ + LMG + L P+PE W +SL Sbjct: 286916 LVRRGFPPRGLPPDPLALMGVFRPQALLAPSPEH--WYRSSL 287035 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = -3 Query: 212 PNPEKNAWEHNSLTIPSPACASEASLEVTDLLLTALENPVKYA 254 P+P +A S ++PSP A + L + L T + P YA Sbjct: 200654 PSPSPSAESSPSRSLPSPTPAETSPLPTAEQLPTLVPFPASYA 200526 >dbj|AP006495.2| Cyanidioschyzon merolae DNA, chromosome 13, complete genome, complete sequence Length = 866983 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/57 (31%), Positives = 23/57 (40%) Frame = -2 Query: 125 FSAAFEAQSCYLLTKTAVSRPLFLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDC 181 FS FEA SC +L+K + VL F R ++G C LDC Sbjct: 749976 FSVLFEADSCTVLSKQRLHLSAHHVLAGLFCAPRKRTVRSPQRMPMTIGGCSALLDC 749806 Database: C.merolae/genome.fa Posted date: Feb 9, 2011 9:02 AM Number of letters in database: 16,546,747 Number of sequences in database: 20 Lambda K H 0.321 0.134 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,539,198 Number of Sequences: 20 Number of extensions: 146470 Number of successful extensions: 960 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 836 Number of HSP's gapped (non-prelim): 383 length of query: 348 length of database: 5,515,582 effective HSP length: 97 effective length of query: 251 effective length of database: 5,513,642 effective search space: 1383924142 effective search space used: 1383924142 frameshift window, decay const: 40, 0.1 T: 13 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)