TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116242735|sp|Q8IV42.2|PSTK_HUMAN RecName:
Full=L-seryl-tRNA(Sec) kinase; AltName: Full=O-phosphoseryl-tRNA(Sec)
kinase
         (348 letters)

Database: A.taiwanensis/genome.fa 
           5379 sequences; 6,149,411 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABJQ01004953.1| Ascogregarina taiwanensis CLRANP132-F01.g1.ab...    28   2.1  
gb|ABJQ01000737.1| Ascogregarina taiwanensis Contig870, whole ge...    27   4.6  
gb|ABJQ01001914.1| Ascogregarina taiwanensis Contig2162, whole g...    26   6.0  
gb|ABJQ01002121.1| Ascogregarina taiwanensis Contig2407, whole g...    26   7.8  

>gb|ABJQ01004953.1| Ascogregarina taiwanensis CLRANP132-F01.g1.ab1, whole genome
           shotgun sequence
          Length = 300

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 111 WEDFITCLKDQDLIFSAAFEAQSCYL 136
           W+D I CL  +D++F      Q CY+
Sbjct: 154 WDDIIFCLFPRDILFPPQSSNQLCYV 77


>gb|ABJQ01000737.1| Ascogregarina taiwanensis Contig870, whole genome shotgun sequence
          Length = 1560

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 137  LTKTAVSRPLFLVLDDNFYYQSMRYEV 163
            +T  A SRPL LVLD+     S+RYE+
Sbjct: 1384 VTVKADSRPLALVLDEFLAPLSIRYEI 1464


>gb|ABJQ01001914.1| Ascogregarina taiwanensis Contig2162, whole genome shotgun sequence
          Length = 2103

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
 Frame = +3

Query: 265 RIICSTNILHKTDQTLRRIVSQTMKEAKGNQEAFSEMTFKQRW-VRANHAA---IWRI-- 318
           R++ +T  L   D   + + S  ++     +++  ++   Q W + A+H     IW +  
Sbjct: 270 RLVQATCRLPSGDVLPKSMRSGPIRS*TSAEQSCGQLFRLQTWSLCASHTT*ETIWGLSK 449

Query: 319 ILGNEHIKCRSAKVGWLQCC 338
           +  NEH+  RS  V W  CC
Sbjct: 450 VEVNEHVDTRSMSVLWRYCC 509


>gb|ABJQ01002121.1| Ascogregarina taiwanensis Contig2407, whole genome shotgun sequence
          Length = 1203

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 196  ALPPETIHLMGRKLEK---PNPEKNAWEHNSLTIPSPACASEASLE 238
            A PP TIHL   + E+    N E +     SL +P+ +   +A LE
Sbjct: 980  ATPPNTIHLFSTRTEECLWGNQEMDKQTTASLILPNCSTVMQAWLE 1117


  Database: A.taiwanensis/genome.fa
    Posted date:  Feb 9, 2011  9:02 AM
  Number of letters in database: 6,149,411
  Number of sequences in database:  5379
  
Lambda     K      H
   0.321    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,081,371
Number of Sequences: 5379
Number of extensions: 50283
Number of successful extensions: 260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of query: 348
length of database: 2,049,803
effective HSP length: 88
effective length of query: 260
effective length of database: 1,576,451
effective search space: 409877260
effective search space used: 409877260
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)